Mercurial > repos > geert-vandeweyer > mutect_wrapper

diff mutect_macros.xml @ 2:3890e5bd1121 draft

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author geert-vandeweyer
date Thu, 13 Feb 2014 09:27:06 -0500
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children b16b3514b628
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mutect_macros.xml	Thu Feb 13 09:27:06 2014 -0500
@@ -0,0 +1,13 @@
+<macros>
+  <xml name="requirements">
+    <requirements>
+      <requirement type="package">mutect</requirement>
+      <requirement type="package" version="0.1.18">samtools</requirement>
+      <requirement type="set_environment">MUTECT_PATH</requirement>
+    </requirements>
+  </xml>
+  <token name="@JAR_PATH@">
+    java -jar "\$MUTECT_PATH/muTect.jar"
+  </token>
+</macros>
+