Mercurial > repos > geert-vandeweyer > mutect_wrapper
comparison tool_dependencies.xml @ 1:528af4b27a3e draft
Uploaded
| author | geert-vandeweyer |
|---|---|
| date | Thu, 13 Feb 2014 09:26:58 -0500 |
| parents | b3afcf0d6d2c |
| children | 9cdd41f22d81 |
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| 0:b3afcf0d6d2c | 1:528af4b27a3e |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="perl_module_threads" version="1.92"> | 3 <set_environment version="1.0"> |
| 4 <repository changeset_revision="01ed0b079724" name="package_perl_threading" owner="geert-vandeweyer" toolshed="http://toolshed.g2.bx.psu.edu" /> | 4 <environment_variable action="set_to" name="MUTECT_PATH">/please set the path to your GATK2 dir in the corresponding env.sh file/</environment_variable> |
| 5 </set_environment> | |
| 6 <package name="samtools" version="0.1.18"> | |
| 7 <repository changeset_revision="a7936f4ea405" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
| 5 </package> | 8 </package> |
| 6 <package name="perl_module_threads_shared" version="1.46"> | 9 </tool_dependency> |
| 7 <repository changeset_revision="01ed0b079724" name="package_perl_threading" owner="geert-vandeweyer" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <package name="perl_module_Thread_Queue" version="3.02"> | |
| 10 <repository changeset_revision="01ed0b079724" name="package_perl_threading" owner="geert-vandeweyer" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
| 11 </package> | |
| 12 | |
| 13 </tool_dependency> |