Mercurial > repos > geert-vandeweyer > clusterfast

changeset 21:8a7011053512 draft

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Uploaded
author geert-vandeweyer
date Tue, 29 Jul 2014 10:49:51 -0400
parents e79b771cf3a9
children 9a26daf268da
files ClusterFast.xml
diffstat 1 files changed, 4 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/ClusterFast.xml	Mon Jul 28 16:40:44 2014 -0400
+++ b/ClusterFast.xml	Tue Jul 29 10:49:51 2014 -0400
@@ -22,6 +22,8 @@
       	-m1 $m1
 	-m2 $m2
 	-d $distance
+	-i $insertsize
+	-s $deviation
      > $runlog
   </command>
   <requirements>
@@ -37,6 +39,8 @@
         <param name="m1" type="integer" value="2" label="Supporting Discordant Read Pairs" help="Default: 2"  />  
 	<param name="m2" type="integer" value="1" label="Supporting Split Reads" help="Default: 1" />
 	<param name="distance" type="integer" value="50000" label="Max Distance From Target To Search" help="Default: 50000" />
+	<param name="insertsize" type="integer" value="230" label="Approximate Library Insert Size" help="Default: 230" />
+	<param name="deviation" type="integer" value="140" label="Insert Size Standard Deviation" help="Default: 140, round to integer value" />
 	<param name="indexes" type="select" label="Reference Genome" help="Select the correct genome build" >
 		<options from_data_table="clusterfast" >
 			<filter type="sort_by" column="2" />