Mercurial > repos > geert-vandeweyer > clusterfast

changeset 9:2649dd253658 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author geert-vandeweyer
date Mon, 28 Jul 2014 09:23:13 -0400
parents 4aca25ddadb0
children 6006459b580a
files ClusterFast.xml
diffstat 1 files changed, 5 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/ClusterFast.xml	Mon Jul 28 09:06:06 2014 -0400
+++ b/ClusterFast.xml	Mon Jul 28 09:23:13 2014 -0400
@@ -8,7 +8,7 @@
       	-t $input2
 	
       ## references 
-	-p $indexes
+	-p "${indexes.fields.path}" 
 		
       ## output files
       	-o $__new_file_path__  ## use galaxy temp dir for automatic cleanup.
@@ -37,7 +37,10 @@
 	<param name="m2" type="integer" value="1" label="Supporting Split Reads" help="Default: 1" />
 	<param name="distance" type="integer" value="50000" label="Max Distance From Target To Search" help="Default: 50000" />
 	<param name="indexes" type="select" label="Reference Genome" help="Select the correct genome build" >
-		<options from_data_table="clusterfast" />
+		<options from_data_table="clusterfast" >
+			<filter type="sort_by" column="2" />
+			<validator type="no_options" message="No indexes are available" />
+		</options>
 	</param>
   </inputs>
   <outputs>