view clusterfast.loc.sample @ 27:4ed740a1f9d9 draft default tip

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#This is a sample file distributed with Galaxy that enables the clusterfast  
#tool to locate genome files for use with blat, novoalign and fasta. You will
#need to supply these files and then create a clusterfast.loc file
#similar to this one (store it in this directory) that points to
#the directories in which those files are stored. The clusterfast.loc
#file has this format (white space characters are TAB characters):
#
#<unique_build_id>	<display_name>		<NOVOALIGN.idx_path;2bit_path;fasta_path>
#
#for example:
#
#hg19	Human (Homo sapiens): hg19		/depot/data2/galaxy/novoalign/hg19.novoidx;/depot/data2/galaxy/twobit/hg19.2bit;/depot/data2/galaxy/fasta/hg19.fa
#mm9	Mouse (Mus musculus): mm9		/depot/data2/galaxy/novoalign/mm9.novoidx;/depot/data2/galaxy/twobit/mm9.2bit;/depot/data2/galaxy/fasta/mm9.fa
#
#then your /depot/data2/galaxy/twobit/ directory
#would need to contain the following 2bit files:
#
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg19.2bit
#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 mm9.2bit
#
# /depot/data2/galaxy/novoalign/ directory
#would need to contain the following novoalign index files files:
#
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg19.novoidx
#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 mm9.novoidx
#
# your fasta folder needs the following files: 
#
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg19.fa
#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 mm9.fa
#