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view tool_dependencies.xml @ 15:c84329c23401 draft

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author geert-vandeweyer
date Mon, 28 Jul 2014 10:12:52 -0400
parents 4a74b359e941
children 4d719572fc9e
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<?xml version="1.0"?>
<tool_dependency>
    <package name="novoalign" version="latest">
        <repository changeset_revision="003907882a0c" name="package_novoalign" owner="geert-vandeweyer" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="velvet" version="latest">
        <repository changeset_revision="688d46996f1e" name="package_velvet" owner="geert-vandeweyer" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="samtools" version="0.1.18">
        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="blat_server" version="latest">
        <repository changeset_revision="455a4bd49c52" name="package_blat_server" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="clusterfast" version="0611">
	<install version="1.0">
		<actions>
			<action type="make_directory">$INSTALL_DIR</action>
			<!-- will be activated when git repository is updated by clusterfast authors. -->
			<!--<action type="move_file"><source>cf_v1.1.jar</source><destination>$INSTALL_DIR</destination></action>-->
			<!--<action type="move_directory_files"><source_directory>cf_scripts</source_directory><destination_directory>$INSTALL_DIR/cf_scripts</destination_directory></action>-->
			<action type="set_environment">
				<!--<environment_variable action="set_to" name="CF_PATH">$INSTALL_DIR</environment_variable>-->
				<environment_variable action="set_to" name="CF_PATH">./</environment_variable>
			</action>
		</actions>
	</install>
    </package>

</tool_dependency>