Mercurial > repos > ganjoo > webservice_toolsuite

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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author ganjoo
date Tue, 07 Jun 2011 17:34:26 -0400
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e7482c82796e Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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1 <tool id="WebServiceTool_input_method" name="Step 2: Verify Settings">
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2 <description> This tool lets the user choose a method and a resource from the Web service description document. Many methods/operations could be grouped together in one description document. But each method/operation requires a unique tool to invoke it. So each method has to be registered with Galaxy individually.</description>
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3 <command interpreter="python">
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4 WebServiceTool_input_method.py
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5 $url
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6 $wadl
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7 $webservice
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8 $resourceUrl
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9 $output
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10 </command>
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11 <inputs>
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12 <param name = "url" type="data" label="a. The previous step was" help="For your information only. The previous step that was executed is displayed. No action required."/>
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13 <param name ="wadl" type ="select" data_ref="url" label ="b. The tool chosen was" help="Displays the Web service tool chosen in Step 1. No action required.">
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14 <options from_dataset="url">
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15 <column name="name" index ="0"/>
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16 <column name="value" index ="0"/>
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17 <filter type="unique_value" name="unique" column="0"/>
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18 </options>
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19 </param>
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20 <param name ="webservice" display = "radio" type ="select" data_ref="url" label ="c. Select the function of the tool you would like to use" help="Some tools have more than one function. It is important to select the appropriate function. One or more functions may be displayed here.">
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21 <options from_dataset="url">
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22 <column name="name" index ="1"/>
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23 <column name="value" index ="1"/>
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24 <filter type="unique_value" name="unique1" column="1"/>
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25 </options>
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26 </param>
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27 <param name ="resourceUrl" display = "radio" type ="select" data_ref="url" label ="d. Further refine the tool function. Select an option based on the documentation or experience" help="Different tools have different options to refine the tool. This could be a choice of formats or resources you want to search. Make selection based on tool documentation or experience.">
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28 <options from_dataset="url">
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29 <column name="name" index ="2"/>
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30 <column name="value" index ="2"/>
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31 <filter type="param_value" ref="webservice" name="resourceUri" column="1"/>
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32 <filter type="unique_value" name="unique2" column="2"/>
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33 </options>
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34 </param>
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35 </inputs>
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36 <outputs>
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37 <data format="tabular" name="output" />
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38 </outputs>
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39
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40 <tests>
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41 <test>
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42 <param name="url" value="127.0.0.1:5001/hello/form"/>
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43 <output name="output" file="outtest"/>
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44 </test>
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45 </tests>
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46
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47 <help>
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48
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49
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50 .. class:: infomark
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52 **TIP:** a. For your information only. The previous step that was executed is displayed. No action required.
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54 .. class:: infomark
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56 **TIP:** b. Displays the Web service tool chosen in Step 1. No action required
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e7482c82796e Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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58 .. class:: infomark
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60 **TIP:** c. Some tools have more than one function. It is important to select the appropriate function.
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61 One or more functions may be displayed here.
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62
e7482c82796e Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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63 .. class:: infomark
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65 **TIP:** d. Different tools have different options to refine the tool. This could be a choice of formats
e7482c82796e Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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66 or resources you want to search.
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67 Make selection based on tool documentation or experience.
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70 *NOTE: Step 1, Step 2 and Step 3 merely add this tool to Galaxy. To use the tool, after completing Step 3, go to the Tools section on left
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71 and find the tool under Web Service Tools and Web Service Workflow Tools.*
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73 </help>
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74
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75 </tool>
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76