Mercurial > repos > gandres > vcftools_filter_stats_diversity
changeset 1:e422123407d6 draft
planemo upload
| author | gandres |
|---|---|
| date | Thu, 31 Mar 2016 09:04:59 -0400 |
| parents | 442eefd0c35d |
| children | 4980ad57ee36 |
| files | test-data/sliding-result2.combined.TsTv.txt test-data/sliding-result2.combined.snp.txt test-data/sliding-result2.combined.snpden.txt test-data/sliding-result2.combined.tstv.txt |
| diffstat | 4 files changed, 1534 insertions(+), 1534 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sliding-result2.combined.TsTv.txt Thu Mar 31 09:04:59 2016 -0400 @@ -0,0 +1,767 @@ +CHROM BinStart Pop1 Pop2 +chr1 0 1.89286 1.83186 +chr1 200000 1.75 1.61905 +chr1 400000 1.28571 1.53846 +chr1 600000 1.5625 1.49351 +chr1 800000 1.34615 1.61765 +chr1 1000000 1.53846 1.125 +chr1 1200000 1.59649 1.52055 +chr1 1400000 1.61957 1.63462 +chr1 1600000 1.41772 1.53333 +chr1 1800000 1.63793 1.85185 +chr1 2000000 1.22917 1.376 +chr1 2200000 1.30952 1.32759 +chr1 2400000 2.07407 2.1087 +chr1 2600000 1.45946 1.58065 +chr1 2800000 1.67442 2.33333 +chr1 3000000 1.69149 1.57576 +chr1 3200000 1.85185 1.90909 +chr1 3400000 1.05263 2.5 +chr1 3600000 2 2.32787 +chr1 3800000 1.61364 1.70455 +chr1 4000000 1.36364 1.25581 +chr1 4200000 1.44898 1.27692 +chr1 4400000 1.95082 1.57353 +chr1 4600000 1.86047 1.7619 +chr1 4800000 1.47222 1.41667 +chr1 5000000 1.81818 1.39286 +chr1 5200000 1.6 1.73333 +chr1 5400000 1.47619 1.40741 +chr1 5600000 1.625 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--- a/test-data/sliding-result2.combined.snp.txt Thu Mar 31 08:49:11 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,767 +0,0 @@ -CHROM BIN_START Pop1 Pop2 -chr1 0 1.215 1.6 -chr1 200000 0.825 1.1 -chr1 400000 0.32 0.33 -chr1 600000 0.82 0.96 -chr1 800000 0.305 0.445 -chr1 1000000 0.33 0.255 -chr1 1200000 0.74 0.92 -chr1 1400000 1.205 1.37 -chr1 1600000 0.955 1.14 -chr1 1800000 0.765 0.77 -chr1 2000000 1.605 1.485 -chr1 2200000 0.485 0.675 -chr1 2400000 0.83 0.715 -chr1 2600000 0.455 0.4 -chr1 2800000 0.575 0.4 -chr1 3000000 1.265 1.275 -chr1 3200000 0.77 0.8 -chr1 3400000 0.195 0.035 -chr1 3600000 0.54 1.015 -chr1 3800000 0.575 0.595 -chr1 4000000 0.39 0.485 -chr1 4200000 0.6 0.74 -chr1 4400000 0.9 0.875 -chr1 4600000 0.615 0.29 -chr1 4800000 0.445 0.435 -chr1 5000000 0.31 0.335 -chr1 5200000 0.13 0.205 -chr1 5400000 1.04 0.975 -chr1 5600000 0.105 0.215 -chr1 5800000 0.07 0.02 -chr1 6000000 0.895 1.185 -chr1 6200000 0.005 0 -chr1 6400000 0.17 0.185 -chr1 6600000 0.125 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0.98 -chr4 23800000 0.03 0.045 -chr4 24000000 0.1 0.165 -chr4 24200000 0.105 0.04 -chr4 24400000 0.585 0.715 -chr4 24600000 0.335 0.44 -chr4 24800000 0.135 0.16 -chr4 25000000 0.575 0.61 -chr4 25200000 0.35 0.46 -chr4 25400000 0.34 0.385 -chr4 25600000 0.75 0.74 -chr4 25800000 1.08 1.32 -chr4 26000000 1.185 1.305 -chr4 26200000 0.09 0.11 -chr4 26400000 0.11 0.14 -chr4 26600000 0.33 0.16 -chr4 26800000 0.345 0.42 -chr4 27000000 0.22 0.275 -chr4 27200000 0.765 0.925 -chr4 27400000 0.61 0.64 -chr4 27600000 0.38 0.545 -chr4 27800000 0.02 0 -chr4 28000000 0.795 0.84
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sliding-result2.combined.snpden.txt Thu Mar 31 09:04:59 2016 -0400 @@ -0,0 +1,767 @@ +CHROM BIN_START Pop1 Pop2 +chr1 0 1.215 1.6 +chr1 200000 0.825 1.1 +chr1 400000 0.32 0.33 +chr1 600000 0.82 0.96 +chr1 800000 0.305 0.445 +chr1 1000000 0.33 0.255 +chr1 1200000 0.74 0.92 +chr1 1400000 1.205 1.37 +chr1 1600000 0.955 1.14 +chr1 1800000 0.765 0.77 +chr1 2000000 1.605 1.485 +chr1 2200000 0.485 0.675 +chr1 2400000 0.83 0.715 +chr1 2600000 0.455 0.4 +chr1 2800000 0.575 0.4 +chr1 3000000 1.265 1.275 +chr1 3200000 0.77 0.8 +chr1 3400000 0.195 0.035 +chr1 3600000 0.54 1.015 +chr1 3800000 0.575 0.595 +chr1 4000000 0.39 0.485 +chr1 4200000 0.6 0.74 +chr1 4400000 0.9 0.875 +chr1 4600000 0.615 0.29 +chr1 4800000 0.445 0.435 +chr1 5000000 0.31 0.335 +chr1 5200000 0.13 0.205 +chr1 5400000 1.04 0.975 +chr1 5600000 0.105 0.215 +chr1 5800000 0.07 0.02 +chr1 6000000 0.895 1.185 +chr1 6200000 0.005 0 +chr1 6400000 0.17 0.185 +chr1 6600000 0.125 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--- a/test-data/sliding-result2.combined.tstv.txt Thu Mar 31 08:49:11 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,767 +0,0 @@ -CHROM BinStart Pop1 Pop2 -chr1 0 1.89286 1.83186 -chr1 200000 1.75 1.61905 -chr1 400000 1.28571 1.53846 -chr1 600000 1.5625 1.49351 -chr1 800000 1.34615 1.61765 -chr1 1000000 1.53846 1.125 -chr1 1200000 1.59649 1.52055 -chr1 1400000 1.61957 1.63462 -chr1 1600000 1.41772 1.53333 -chr1 1800000 1.63793 1.85185 -chr1 2000000 1.22917 1.376 -chr1 2200000 1.30952 1.32759 -chr1 2400000 2.07407 2.1087 -chr1 2600000 1.45946 1.58065 -chr1 2800000 1.67442 2.33333 -chr1 3000000 1.69149 1.57576 -chr1 3200000 1.85185 1.90909 -chr1 3400000 1.05263 2.5 -chr1 3600000 2 2.32787 -chr1 3800000 1.61364 1.70455 -chr1 4000000 1.36364 1.25581 -chr1 4200000 1.44898 1.27692 -chr1 4400000 1.95082 1.57353 -chr1 4600000 1.86047 1.7619 -chr1 4800000 1.47222 1.41667 -chr1 5000000 1.81818 1.39286 -chr1 5200000 1.6 1.73333 -chr1 5400000 1.47619 1.40741 -chr1 5600000 1.625 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