Mercurial > repos > galaxyp > reactome_pathwaymatcher

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pathwaymatcher commit 7e04827e48352f6b28cf2e2c93a89a270e5bf026
author galaxyp
date Wed, 04 Jul 2018 04:27:50 -0400
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1e38071ab9d5 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pathwaymatcher commit c12a99d3da62c83b779175b3c9022e7d5622053a
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1 PathwayMatcher
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2 =======================
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4 - Home: <https://github.com/LuisFranciscoHS/PathwayMatcher/>
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5 - Galaxy Tool Shed: <http://toolshed.g2.bx.psu.edu/view/galaxyp/pathwaymatcher>
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6 - Tools ID: `pathwaymatcher`
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9 Description
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10 -----------
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12 PathwayMatcher is a software tool written in Java to search for pathways related to a list of proteins in Reactome.
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15 General Requirements
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16 --------------------
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ee1dfac35bb3 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pathwaymatcher commit 7e04827e48352f6b28cf2e2c93a89a270e5bf026
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18 This tool requires a Java runtime 1.8 or greater to work. To avoid out of memory errors you should set the maximum heapspace for java processes as the default is most likely too small. For example, to set this in your shell:
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20 export _JAVA_OPTIONS='-Xmx1500M'
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22 It is also possible to set this on a per tool basis using advanced features of the galaxy job config system.
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25 License
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26 -------
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28 PathwayMatcher is a free open-source project, following an Apache License 2.0.
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31 Authors
1e38071ab9d5 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pathwaymatcher commit c12a99d3da62c83b779175b3c9022e7d5622053a
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32 -------
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34 Authors and contributors:
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36 * Luis Francisco Hernández Sánchez <luis.sanchez@uib.no>
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37 * Carlos Horro Marcos <carlos.horro@uib.no>