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GalaxyP - PSM2SAM
===================

* Home: <https://github.com/galaxyproteomics/tools-galaxyp/>
* Galaxy Tool Shed: <http://toolshed.g2.bx.psu.edu/view/galaxyp/psm_to_sam>
* Tool ID: `psm_to_sam`


Description
-----------

The interpretation of proteomics data is significantly enhanced by genomic annotation. 
Using proBAMr, peptide-spectrum-matches can be easily reannotated using user-specified gene annotation 
schemes and assembled into both protein and gene identifications. Using the genome as a common reference, 
proBAMr facilitates seamless proteomics and proteogenomics data integration. ProBAM files can be readily 
visualized in genome browsers and thus bring proteomics data analysis to a general audience beyond the 
proteomics community.

See:

* <https://www.bioconductor.org/packages/release/bioc/html/proBAMr.html>


GalaxyP Community
-----------------

Current governing community policies for [GalaxyP](https://github.com/galaxyproteomics/) and other information can be found at:

<https://github.com/galaxyproteomics>


License
-------

Copyright (c) 2017 Authors listed below.

To the extent possible under law, the author(s) have dedicated all copyright and related and neighboring rights to this software to the public domain worldwide. This software is distributed without any warranty.

You should have received a copy of the CC0 Public Domain Dedication along with this software. If not, see <https://creativecommons.org/publicdomain/zero/1.0/>.

You can copy, modify, distribute and perform the work, even for commercial purposes, all without asking permission.


Contributing
------------

Contributions to this repository are reviewed through pull requests. If you would like your work acknowledged, please also add yourself to the Authors section. If your pull request is accepted, you will also be acknowledged in <https://github.com/galaxyproteomics/tools-galaxyp/>


Authors
-------

Authors and contributors:

* Matt Chambers <matt.chambers42@gmail.com>

* Xiaojing Wang <xiaojing.wang@bcm.edu>
  Baylor Medical College