view aggregationparams.xml @ 0:6b19fc8791b2 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_labeledproteinquantification commit eda2d62c81b38ed3975482d0198e3dd75ff1d74f"

<macros>
    <xml name="AggregationParams">
        <section name="LabeledTransform" title="Labeled Transforms">
            <conditional name="LabeledTransformLightCond">
                <param name="Type" type="select" label="Light">
                    <option value="None">None</option>
                    <option value="Log2">Log2</option>
                    <option value="Substract">Substract</option>
                    <option value="Add">Add</option>
                    <option value="DivideBy">DivideBy</option>
                    <option value="MultiplyBy">MultiplyBy</option>
                </param>
                <when value="None">
                </when>
                <when value="Log2">
                </when>
                <when value="Substract">
                    <param name="Value" type="float" value="0.0" optional="true" label="Value" />
                </when>
                <when value="Add">
                    <param name="Value" type="float" value="0.0" optional="true" label="Value" />
                </when>
                <when value="DivideBy">
                    <param name="Value" type="float" value="0.0" optional="true" label="Value" />
                </when>
                <when value="MultiplyBy">
                    <param name="Value" type="float" value="0.0" optional="true" label="Value" />
                </when>
            </conditional>
            <conditional name="LabeledTransformHeavyCond">
                <param name="Type" type="select" label="Heavy">
                    <option value="None">None</option>
                    <option value="Log2">Log2</option>
                    <option value="Substract">Substract</option>
                    <option value="Add">Add</option>
                    <option value="DivideBy">DivideBy</option>
                    <option value="MultiplyBy">MultiplyBy</option>
                </param>
                <when value="None">
                </when>
                <when value="Log2">
                </when>
                <when value="Substract">
                    <param name="Value" type="float" value="0.0" optional="true" label="Value" />
                </when>
                <when value="Add">
                    <param name="Value" type="float" value="0.0" optional="true" label="Value" />
                </when>
                <when value="DivideBy">
                    <param name="Value" type="float" value="0.0" optional="true" label="Value" />
                </when>
                <when value="MultiplyBy">
                    <param name="Value" type="float" value="0.0" optional="true" label="Value" />
                </when>
            </conditional>
            <conditional name="LabeledTransformRatioCond">
                <param name="Type" type="select" label="Ratio">
                    <option value="None">None</option>
                    <option value="Log2">Log2</option>
                    <option value="Substract">Substract</option>
                    <option value="Add">Add</option>
                    <option value="DivideBy">DivideBy</option>
                    <option value="MultiplyBy">MultiplyBy</option>
                </param>
                <when value="None">
                </when>
                <when value="Log2">
                </when>
                <when value="Substract">
                    <param name="Value" type="float" value="0.0" optional="true" label="Value" />
                </when>
                <when value="Add">
                    <param name="Value" type="float" value="0.0" optional="true" label="Value" />
                </when>
                <when value="DivideBy">
                    <param name="Value" type="float" value="0.0" optional="true" label="Value" />
                </when>
                <when value="MultiplyBy">
                    <param name="Value" type="float" value="0.0" optional="true" label="Value" />
                </when>
            </conditional>                                    
        </section>
        <section name="LabeledSingleFilters" title="Labeled Single filters">
            <section name="Light" title="Light">
                <param name="BiggerThan" type="float" value="" optional="true" label="Is bigger than" />
                <param name="SmallerThan" type="float" value="" optional="true" label="Is smaller than" />
            </section>
            <section name="Heavy" title="Heavy">
                <param name="BiggerThan" type="float" value="" optional="true" label="Is bigger than" />
                <param name="SmallerThan" type="float" value="" optional="true" label="Is smaller than" />
            </section>
            <section name="Ratio" title="Ratio">
                <param name="BiggerThan" type="float" value="" optional="true" label="Is bigger than" />
                <param name="SmallerThan" type="float" value="" optional="true" label="Is smaller than" />
            </section>
        </section>
        <section name="LabeledGroupFilters" title="Labeled Group Filters">
            <section name="Light" title="Light">
                <param name="Tukey" type="float" value="" optional="true" label="Tukey" />
                <param name="Stdev" type="float" value="" optional="true" label="Stdev" />
            </section>
            <section name="Heavy" title="Heavy">
                <param name="Tukey" type="float" value="" optional="true" label="Tukey" />
                <param name="Stdev" type="float" value="" optional="true" label="Stdev" />
            </section>
            <section name="Ratio" title="Ratio">
                <param name="Tukey" type="float" value="" optional="true" label="Tukey" />
                <param name="Stdev" type="float" value="" optional="true" label="Stdev" />
            </section>
        </section>        
        <section name="LabeledAggregation" title="Labeled Aggregation">
            <param name="labeledAggregationLight" type="select" label="Light">
                <option value="Mean">Mean</option>
                <option value="Median">Median</option>
                <option value="Sum">Sum</option>
            </param>
            <param name="labeledAggregationHeavy" type="select" label="Heavy">
                <option value="Mean">Mean</option>
                <option value="Median">Median</option>
                <option value="Sum">Sum</option>
            </param>
            <param name="labeledAggregationRatio" type="select" label="Ratio">
                <option value="Mean">Mean</option>
                <option value="Median">Median</option>
                <option value="Sum">Sum</option>
            </param>
        </section>
    </xml>
</macros>