Mercurial > repos > galaxyp > peptideshaker
changeset 3:8d6c1807c5a5 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit d369c3451aaf7bfc8cc4f6f1dc52f6ea604e66bc-dirty
author | iracooke |
---|---|
date | Wed, 03 Jun 2015 17:44:48 -0400 |
parents | 843dba58aa7c |
children | 3fd13d0fd908 |
files | peptide_shaker.xml searchgui.xml |
diffstat | 2 files changed, 7 insertions(+), 7 deletions(-) [+] |
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--- a/peptide_shaker.xml Wed Jun 03 17:11:02 2015 -0400 +++ b/peptide_shaker.xml Wed Jun 03 17:44:48 2015 -0400 @@ -2,12 +2,12 @@ <description> Perform protein identification using various search engines based on results from SearchGUI </description> + <macros> + <import>macros.xml</import> + </macros> <requirements> <requirement type="package" version="0.39">peptide_shaker</requirement> </requirements> - <macros> - <import>macros.xml</import> - </macros> <expand macro="stdio" /> <command> <![CDATA[
--- a/searchgui.xml Wed Jun 03 17:11:02 2015 -0400 +++ b/searchgui.xml Wed Jun 03 17:44:48 2015 -0400 @@ -2,12 +2,12 @@ <description> Perform protein identification using various search engines and prepare results for input to Peptide Shaker </description> + <macros> + <import>macros.xml</import> + </macros> <requirements> <requirement type="package" version="1.28">searchgui</requirement> </requirements> - <macros> - <import>macros.xml</import> - </macros> <expand macro="stdio" /> <command> <![CDATA[ @@ -140,7 +140,7 @@ -ms_amanda_instrument ${ms_amanda.ms_amanda_instrument} -ms_amanda_max_rank ${ms_amanda.ms_amanda_max_rank} -ms_amanda_mono ${ms_amanda.ms_amanda_mono} - # end if + #end if #if $myrimatch.myrimatch_advanced == "yes" -myrimatch_min_pep_length ${myrimatch.myrimatch_min_pep_length}