Mercurial > repos > galaxyp > peptideshaker
changeset 9:21e5a77a7b57 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit ac193f61dd02d3adbe8bc504f0b94edb1335f79d
| author | iracooke |
|---|---|
| date | Thu, 04 Jun 2015 12:10:51 -0400 |
| parents | e61db312ce43 |
| children | 9d12b1d3c4ef |
| files | searchgui.xml test-data/tiny_searchgui_result1.zip |
| diffstat | 2 files changed, 3 insertions(+), 7 deletions(-) [+] |
line wrap: on
line diff
--- a/searchgui.xml Thu Jun 04 09:31:09 2015 -0400 +++ b/searchgui.xml Thu Jun 04 12:10:51 2015 -0400 @@ -872,6 +872,8 @@ <data name="searchgui_results" format="searchgui_archive" from_work_dir="searchgui_out.zip" label="${tool.name} on ${on_string}" /> </outputs> <tests> + + <!-- Test that specifying non-default search engines --> <test> <param name="peak_lists" value="searchgui_tinyspectra1.mgf"/> <param name="input_database" value="searchgui_tinydb1.fasta" ftype="fasta"/> @@ -880,15 +882,9 @@ <param name="variable_modifications" value="oxidation of m"/> <param name="min_charge" value="1"/> <param name="max_charge" value="3"/> - <param name="XTANDEM_selector" value="True"/> + <param name="engines" value="X!Tandem,MSGF,MyriMatch,OMSSA,Comet"/> <param name="xtandem.xtandem_advanced" value="yes"/> <param name="xtandem_advanced.xtandem_refine_selector" value="yes"/> - <param name="OMSSA_selector" value="False"/> - <param name="MSGF_selector" value="True"/> - <param name="TIDE_selector" value="False"/> - <param name="MYRIMATCH_selector" value="False"/> - <param name="COMET_selector" value="False"/> - <param name="MS_AMANDA_selector" value="False"/> <output name="output" file="tiny_searchgui_result1.zip" ftype="searchgui_archive" compare="sim_size" delta="600" /> </test>