Mercurial > repos > galaxyp > peptideshaker

changeset 14:0c50fe88ebfc draft

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Uploaded
author galaxyp
date Mon, 19 Oct 2015 16:57:46 -0400
parents 3ccfbb673089
children 3fa49ed11f3d
files macros.xml searchgui.xml tool_dependencies.xml
diffstat 3 files changed, 7 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Thu Oct 15 16:19:59 2015 -0400
+++ b/macros.xml	Mon Oct 19 16:57:46 2015 -0400
@@ -26,7 +26,7 @@
             -ri $reverse_ion
     </token>
     <token name="@SEARCHGUI_MAJOR_VERSION@">2</token>
-    <token name="@SEARCH_GUI_VERION@">2.1</token>
+    <token name="@SEARCHGUI_VERSION@">2.1</token>
     <xml name="general_options">
         <param name="precursor_ion_tol_units" type="select" label="Precursor Ion Tolerance Units"
             help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions">
--- a/searchgui.xml	Thu Oct 15 16:19:59 2015 -0400
+++ b/searchgui.xml	Mon Oct 19 16:57:46 2015 -0400
@@ -1,4 +1,4 @@
-<tool id="search_gui" name="Search GUI" version="2.1.1">
+<tool id="search_gui" name="Search GUI" version="@SEARCHGUI_VERSION@.1">
     <description>
         Perform protein identification using various search engines and prepare results for input to Peptide Shaker
     </description>
@@ -6,7 +6,7 @@
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="2.1">searchgui</requirement>
+        <requirement type="package" version="@SEARCHGUI_VERSION@">searchgui</requirement>
         <environment_variable name="LC_ALL" action="set_to">C</environment_variable>        
     </requirements>
     <expand macro="stdio" />
--- a/tool_dependencies.xml	Thu Oct 15 16:19:59 2015 -0400
+++ b/tool_dependencies.xml	Mon Oct 19 16:57:46 2015 -0400
@@ -1,9 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="searchgui" version="1.28">
-        <repository changeset_revision="f50096190d0d" name="package_searchgui_1_28" owner="iracooke" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="searchgui" version="2.1">
+        <repository changeset_revision="c3e018747db9" name="package_searchgui_2_1" owner="iracooke" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="peptide_shaker" version="0.40">
-        <repository changeset_revision="ad506cfe07a8" name="package_peptideshaker_0_40" owner="iracooke" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="peptide_shaker" version="1.1">
+        <repository changeset_revision="a21a8f32bb5b" name="package_peptideshaker_1_1" owner="iracooke" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>