Mercurial > repos > galaxyp > peptideshaker
view admin_scripts/build_mods_loc.py @ 3:8d6c1807c5a5 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit d369c3451aaf7bfc8cc4f6f1dc52f6ea604e66bc-dirty
author | iracooke |
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date | Wed, 03 Jun 2015 17:44:48 -0400 |
parents | a9e90cdcb97a |
children | b72821cab1d7 |
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#!/usr/bin/env python import xml.etree.ElementTree as ET from os.path import exists with open("searchgui_mods.loc.sample", "w") as output: for mods_path in ["searchGUI_mods.xml", "searchGUI_usermods.xml"]: tree = ET.parse(mods_path) modifications_el = tree.getroot() for mod in modifications_el.findall("{http://www.ncbi.nlm.nih.gov}MSModSpec"): name_el = mod.find("{http://www.ncbi.nlm.nih.gov}MSModSpec_name") output.write("%s\n" % name_el.text.lower())