diff searchgui.xml @ 9:21e5a77a7b57 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit ac193f61dd02d3adbe8bc504f0b94edb1335f79d

--- a/searchgui.xml	Thu Jun 04 09:31:09 2015 -0400
+++ b/searchgui.xml	Thu Jun 04 12:10:51 2015 -0400
@@ -872,6 +872,8 @@
         <data name="searchgui_results" format="searchgui_archive" from_work_dir="searchgui_out.zip" label="${tool.name} on ${on_string}" />
     </outputs>
     <tests>
+
+        <!-- Test that specifying non-default search engines -->
         <test>
             <param name="peak_lists" value="searchgui_tinyspectra1.mgf"/>
             <param name="input_database" value="searchgui_tinydb1.fasta" ftype="fasta"/>
@@ -880,15 +882,9 @@
             <param name="variable_modifications" value="oxidation of m"/>
             <param name="min_charge" value="1"/>
             <param name="max_charge" value="3"/>
-            <param name="XTANDEM_selector" value="True"/>
+            <param name="engines" value="X!Tandem,MSGF,MyriMatch,OMSSA,Comet"/>
             <param name="xtandem.xtandem_advanced" value="yes"/>
             <param name="xtandem_advanced.xtandem_refine_selector" value="yes"/>
-            <param name="OMSSA_selector" value="False"/>
-            <param name="MSGF_selector" value="True"/>
-            <param name="TIDE_selector" value="False"/>
-            <param name="MYRIMATCH_selector" value="False"/>
-            <param name="COMET_selector" value="False"/>
-            <param name="MS_AMANDA_selector" value="False"/>
 
             <output name="output" file="tiny_searchgui_result1.zip" ftype="searchgui_archive" compare="sim_size" delta="600" /> 
         </test>