Mercurial > repos > galaxyp > package_openms_1_11

changeset 2:50cf95930bb6 draft default tip

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Uploaded
author bgruening
date Sat, 18 Jan 2014 10:57:00 -0500
parents f0f48b09273f
children
files tool_dependencies.xml
diffstat 1 files changed, 19 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Nov 14 13:07:15 2013 -0500
+++ b/tool_dependencies.xml	Sat Jan 18 10:57:00 2014 -0500
@@ -6,23 +6,36 @@
     <package name="Qt" version="4.8">
         <repository changeset_revision="64344b23c64c" name="package_qt_4_8" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
+    <package name="zlib" version="1.2.8">
+        <repository changeset_revision="12711c8cada7" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
     <package name="openms" version="1.11.1">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">http://downloads.sourceforge.net/project/open-ms/OpenMS/OpenMS-1.11.1/OpenMS-1.11.1.tar.gz</action>
-
+                <action type="download_by_url">http://sourceforge.net/projects/open-ms/files/OpenMS/OpenMS-1.11.1/OpenMS-1.11.1.tar.gz</action>
                 <!-- populate the environment variables from the dependend repos -->
                 <action type="set_environment_for_install">
                     <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                         <package name="libtool" version="2.4" />
                     </repository>
                     <repository changeset_revision="64344b23c64c" name="package_qt_4_8" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
-                        <package name="Qt" version="4.8 " />
+                        <package name="Qt" version="4.8" />
+                    </repository>
+                    <repository changeset_revision="12711c8cada7" name="package_zlib_1_2_8" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="zlib" version="1.2.8" />
                     </repository>
                 </action>
 
                 <action type="change_directory">contrib</action>
-                <action type="shell_command">cmake .</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=SEQAN</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=LIBSVM</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=XERCESC</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=GSL</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=BOOST</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=COINOR</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=BZIP2</action>
+                <action type="shell_command">cmake . -DBUILD_TYPE=GLPK</action>
+
                 <action type="change_directory">..</action>
                 <action type="shell_command">cmake . -DINSTALL_PREFIX=$INSTALL_DIR</action>
                 <action type="shell_command">make doc_minimal</action>
@@ -37,6 +50,8 @@
         <readme>
             This package downloads and installs OpenMS.
             http://open-ms.sourceforge.net/
+            
+            Requirements: OpenGL is needed to compile OpenMS. You can find libopengl.so usually in some mesa libraries.
         </readme>
     </package>
 </tool_dependency>