|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="mono" version="4.0">
|
|
|
4 <repository changeset_revision="d081ac7d12d1" name="package_mono_4_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
5 </package>
|
|
|
6 <package name="morpheus" version="165">
|
|
|
7 <install version="1.0">
|
|
|
8 <actions>
|
|
|
9 <action type="download_by_url">http://sourceforge.net/projects/morpheus-ms/files/revision%20165/Morpheus%20%28Linux%29.tar.gz</action>
|
|
|
10 <action type="set_environment_for_install">
|
|
|
11 <repository changeset_revision="d081ac7d12d1" name="package_mono_4_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
12 <package name="mono" version="4.0" />
|
|
|
13 </repository>
|
|
|
14 </action>
|
|
|
15 <action type="move_directory_files">
|
|
|
16 <source_directory>.</source_directory>
|
|
|
17 <destination_directory>$INSTALL_DIR/</destination_directory>
|
|
|
18 </action>
|
|
|
19 <action type="set_environment">
|
|
|
20 <environment_variable action="set_to" name="MORPHEUS_ROOT_PATH">$INSTALL_DIR</environment_variable>
|
|
|
21 <environment_variable action="prepend_to" name="PATH">$ENV[MONO_ROOT_PATH]/bin</environment_variable>
|
|
|
22 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[MONO_ROOT_PATH]/lib</environment_variable>
|
|
|
23 <environment_variable action="set_to" name="MONO_ROOT_PATH">$ENV[MONO_ROOT_PATH]</environment_variable>
|
|
|
24 </action>
|
|
|
25 </actions>
|
|
|
26 </install>
|
|
|
27 <readme>
|
|
|
28 Install Galaxy package application for Morpheus release 165 for use on linux
|
|
|
29 Must be executed with mono:
|
|
|
30 mono ${MORPHEUS_ROOT_PATH}/morpheus_cl.exe -d input.mzML -db searchDB.fasta
|
|
|
31 http://morpheus-ms.sourceforge.net/
|
|
|
32 </readme>
|
|
|
33 </package>
|
|
|
34 </tool_dependency>
|
