Mercurial > repos > galaxyp > openms_xtandemadapter
changeset 9:0604d9974aec draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 42171f39c42277bcfb50271180dcc9c82d3e8e74
| author | galaxyp |
|---|---|
| date | Mon, 12 Feb 2018 08:42:13 -0500 |
| parents | 52a38269171f |
| children | 258567d21673 |
| files | XTandemAdapter.xml readme.md |
| diffstat | 2 files changed, 11 insertions(+), 3 deletions(-) [+] |
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--- a/XTandemAdapter.xml Mon Nov 06 07:07:52 2017 -0500 +++ b/XTandemAdapter.xml Mon Feb 12 08:42:13 2018 -0500 @@ -92,7 +92,7 @@ $param_enzyme #end if #end if -#if $param_missed_cleavages: +#if str($param_missed_cleavages) != '': -missed_cleavages $param_missed_cleavages #end if #if $param_semi_cleavage:
--- a/readme.md Mon Nov 06 07:07:52 2017 -0500 +++ b/readme.md Mon Feb 12 08:42:13 2018 -0500 @@ -117,7 +117,14 @@ [...] ]]> ``` - + + * In Xtandem Converter and probably in others: + + ``` + #if str($param_missed_cleavages) != '': + ``` + This is because integers needs to be compared as string otherwise `0` becomes `false`. + * In `MetaProSIP.xml` add `R` as a requirement: ``` @@ -164,7 +171,8 @@ ``` - * These tools have multiple outputs (number of inputs = number of outputs) which is not yet supported in Galaxy-stable and are therefore in `SKIP_TOOLS_FILES.txt`: + * These tools have multiple outputs (number of inputs = number of outputs) which is not yet supported in + by the automatic conversion step and are therefore in `SKIP_TOOLS_FILES.txt`: * SeedListGenerator * SpecLibSearcher * MapAlignerIdentification