Mercurial > repos > galaxyp > openms_spectrafilterbernnorm
diff SpectraFilterBernNorm.xml @ 10:89abcc2a319f draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
| author | galaxyp |
|---|---|
| date | Wed, 15 May 2019 05:27:40 -0400 |
| parents | 15673031e7d9 |
| children | ce3aef631395 |
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--- a/SpectraFilterBernNorm.xml Mon Feb 12 08:42:01 2018 -0500 +++ b/SpectraFilterBernNorm.xml Wed May 15 05:27:40 2019 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> -<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Identification]--> -<tool id="SpectraFilterBernNorm" name="SpectraFilterBernNorm" version="2.2.0"> +<tool id="SpectraFilterBernNorm" name="SpectraFilterBernNorm" version="2.3.0"> <description>Applies thresholdfilter to peak spectra.</description> <macros> <token name="@EXECUTABLE@">SpectraFilterBernNorm</token> @@ -10,7 +10,7 @@ <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> - <command>SpectraFilterBernNorm + <command detect_errors="aggressive"><![CDATA[SpectraFilterBernNorm #if $param_in: -in $param_in @@ -32,7 +32,7 @@ -algorithm:C2 $adv_opts.param_algorithm_C2 #end if #end if -</command> +]]></command> <inputs> <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> <param name="param_algorithm_threshold" type="float" value="0.1" label="Threshold of the Bern et al. normalization" help="(-threshold) "/> @@ -48,5 +48,5 @@ <help>Applies thresholdfilter to peak spectra. -For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterBernNorm.html</help> +For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SpectraFilterBernNorm.html</help> </tool>