Mercurial > repos > galaxyp > openms_spectrafilterbernnorm
comparison SpectraFilterBernNorm.xml @ 10:89abcc2a319f draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
---|---|
date | Wed, 15 May 2019 05:27:40 -0400 |
parents | 15673031e7d9 |
children | ce3aef631395 |
comparison
equal
deleted
inserted
replaced
9:75398e281c13 | 10:89abcc2a319f |
---|---|
1 <?xml version='1.0' encoding='UTF-8'?> | 1 <?xml version='1.0' encoding='UTF-8'?> |
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> |
3 <!--Proposed Tool Section: [Identification]--> | 3 <!--Proposed Tool Section: [Identification]--> |
4 <tool id="SpectraFilterBernNorm" name="SpectraFilterBernNorm" version="2.2.0"> | 4 <tool id="SpectraFilterBernNorm" name="SpectraFilterBernNorm" version="2.3.0"> |
5 <description>Applies thresholdfilter to peak spectra.</description> | 5 <description>Applies thresholdfilter to peak spectra.</description> |
6 <macros> | 6 <macros> |
7 <token name="@EXECUTABLE@">SpectraFilterBernNorm</token> | 7 <token name="@EXECUTABLE@">SpectraFilterBernNorm</token> |
8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>SpectraFilterBernNorm | 13 <command detect_errors="aggressive"><![CDATA[SpectraFilterBernNorm |
14 | 14 |
15 #if $param_in: | 15 #if $param_in: |
16 -in $param_in | 16 -in $param_in |
17 #end if | 17 #end if |
18 #if $param_out: | 18 #if $param_out: |
30 #end if | 30 #end if |
31 #if $adv_opts.param_algorithm_C2: | 31 #if $adv_opts.param_algorithm_C2: |
32 -algorithm:C2 $adv_opts.param_algorithm_C2 | 32 -algorithm:C2 $adv_opts.param_algorithm_C2 |
33 #end if | 33 #end if |
34 #end if | 34 #end if |
35 </command> | 35 ]]></command> |
36 <inputs> | 36 <inputs> |
37 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> | 37 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> |
38 <param name="param_algorithm_threshold" type="float" value="0.1" label="Threshold of the Bern et al. normalization" help="(-threshold) "/> | 38 <param name="param_algorithm_threshold" type="float" value="0.1" label="Threshold of the Bern et al. normalization" help="(-threshold) "/> |
39 <expand macro="advanced_options"> | 39 <expand macro="advanced_options"> |
40 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> | 40 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> |
46 <data name="param_out" format="mzml"/> | 46 <data name="param_out" format="mzml"/> |
47 </outputs> | 47 </outputs> |
48 <help>Applies thresholdfilter to peak spectra. | 48 <help>Applies thresholdfilter to peak spectra. |
49 | 49 |
50 | 50 |
51 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterBernNorm.html</help> | 51 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SpectraFilterBernNorm.html</help> |
52 </tool> | 52 </tool> |