Mercurial > repos > galaxyp > openms_ptmodel
changeset 1:2ee5a9a86f8a draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
| author | galaxyp |
|---|---|
| date | Tue, 18 Apr 2017 15:47:12 -0400 |
| parents | 4ac42a7ddf1c |
| children | 80d73ef6fb8a |
| files | PTModel.xml readme.md |
| diffstat | 2 files changed, 14 insertions(+), 11 deletions(-) [+] |
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--- a/PTModel.xml Wed Mar 01 10:06:08 2017 -0500 +++ b/PTModel.xml Tue Apr 18 15:47:12 2017 -0400 @@ -25,13 +25,23 @@ -c $param_c #end if #if $param_svm_type: - -svm_type $param_svm_type + -svm_type + #if " " in str($param_svm_type): + "$param_svm_type" + #else + $param_svm_type + #end if #end if #if $param_nu: -nu $param_nu #end if #if $param_kernel_type: - -kernel_type $param_kernel_type + -kernel_type + #if " " in str($param_kernel_type): + "$param_kernel_type" + #else + $param_kernel_type + #end if #end if #if $param_degree: -degree $param_degree
--- a/readme.md Wed Mar 01 10:06:08 2017 -0500 +++ b/readme.md Tue Apr 18 15:47:12 2017 -0400 @@ -39,10 +39,10 @@ * clone or install CTD2Galaxy ```bash - git clone https://github.com/blankclemens/CTD2Galaxy.git + git clone https://github.com/WorkflowConversion/CTD2Galaxy.git ``` - * If you have CTDopts and CTD2Galaxy installed you are ready to generate Galaxy Tools from CTD definitions. Change the following command according to your needs, especially the `/PATH/TO` parts. + * If you have CTDopts and CTD2Galaxy installed you are ready to generate Galaxy Tools from CTD definitions. Change the following command according to your needs, especially the `/PATH/TO` parts. The default files are provided in this repository. ```bash python generator.py \ @@ -102,13 +102,6 @@ [...] ]]> ``` - * In `PeakPickerHiRes.xml`, the parameter `report_FWHM_unit` has to be put in quotation marks. Look for the following line - - -algorithm:report_FWHM_unit $param_algorithm_report_FWHM_unit - - and change it to - - -algorithm:report_FWHM_unit "$param_algorithm_report_FWHM_unit" * In `FileConverter.xml` add `auto_format="true"` to the output, e.g.: