diff ProteinResolver.xml @ 12:027fe5d6b53b draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/ProteinResolver.xml	Mon Feb 12 08:40:49 2018 -0500
+++ b/ProteinResolver.xml	Wed May 15 05:23:19 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Quantitation]-->
-<tool id="ProteinResolver" name="ProteinResolver" version="2.2.0">
+<tool id="ProteinResolver" name="ProteinResolver" version="2.3.0">
   <description>protein inference</description>
   <macros>
     <token name="@EXECUTABLE@">ProteinResolver</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>ProteinResolver
+  <command detect_errors="aggressive"><![CDATA[ProteinResolver
 
 #if $param_fasta:
   -fasta $param_fasta
@@ -70,7 +70,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_fasta" type="data" format="fasta" optional="False" label="Input database file" help="(-fasta) "/>
     <param name="param_in" type="data" format="idxml,consensusxml" multiple="true" optional="True" size="30" label="Input file(s) holding experimental data" help="(-in) ">
@@ -130,5 +130,5 @@
   <help>protein inference
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_ProteinResolver.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_ProteinResolver.html</help>
 </tool>