Mercurial > repos > galaxyp > openms_proteinresolver
comparison ProteinResolver.xml @ 12:027fe5d6b53b draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
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date | Wed, 15 May 2019 05:23:19 -0400 |
parents | e62c55afeae4 |
children | 329db21c16d5 |
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11:36d51d1b5231 | 12:027fe5d6b53b |
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1 <?xml version='1.0' encoding='UTF-8'?> | 1 <?xml version='1.0' encoding='UTF-8'?> |
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> |
3 <!--Proposed Tool Section: [Quantitation]--> | 3 <!--Proposed Tool Section: [Quantitation]--> |
4 <tool id="ProteinResolver" name="ProteinResolver" version="2.2.0"> | 4 <tool id="ProteinResolver" name="ProteinResolver" version="2.3.0"> |
5 <description>protein inference</description> | 5 <description>protein inference</description> |
6 <macros> | 6 <macros> |
7 <token name="@EXECUTABLE@">ProteinResolver</token> | 7 <token name="@EXECUTABLE@">ProteinResolver</token> |
8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>ProteinResolver | 13 <command detect_errors="aggressive"><![CDATA[ProteinResolver |
14 | 14 |
15 #if $param_fasta: | 15 #if $param_fasta: |
16 -fasta $param_fasta | 16 -fasta $param_fasta |
17 #end if | 17 #end if |
18 -in | 18 -in |
68 #if $adv_opts.adv_opts_selector=='advanced': | 68 #if $adv_opts.adv_opts_selector=='advanced': |
69 #if $adv_opts.param_force: | 69 #if $adv_opts.param_force: |
70 -force | 70 -force |
71 #end if | 71 #end if |
72 #end if | 72 #end if |
73 </command> | 73 ]]></command> |
74 <inputs> | 74 <inputs> |
75 <param name="param_fasta" type="data" format="fasta" optional="False" label="Input database file" help="(-fasta) "/> | 75 <param name="param_fasta" type="data" format="fasta" optional="False" label="Input database file" help="(-fasta) "/> |
76 <param name="param_in" type="data" format="idxml,consensusxml" multiple="true" optional="True" size="30" label="Input file(s) holding experimental data" help="(-in) "> | 76 <param name="param_in" type="data" format="idxml,consensusxml" multiple="true" optional="True" size="30" label="Input file(s) holding experimental data" help="(-in) "> |
77 <sanitizer> | 77 <sanitizer> |
78 <valid initial="string.printable"> | 78 <valid initial="string.printable"> |
128 <data name="param_additional_info" format="tabular"/> | 128 <data name="param_additional_info" format="tabular"/> |
129 </outputs> | 129 </outputs> |
130 <help>protein inference | 130 <help>protein inference |
131 | 131 |
132 | 132 |
133 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_ProteinResolver.html</help> | 133 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_ProteinResolver.html</help> |
134 </tool> | 134 </tool> |