Mercurial > repos > galaxyp > openms_openswathworkflow
changeset 6:aef076574eab draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 8fcd33df23901e111d6c18f450bd09cd8cb3819e
| author | galaxyp |
|---|---|
| date | Tue, 08 Aug 2017 13:24:14 -0400 |
| parents | 872ffe5b4230 |
| children | 28d3fb40f4b8 |
| files | OpenSwathWorkflow.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/OpenSwathWorkflow.xml Mon Aug 07 14:47:06 2017 -0400 +++ b/OpenSwathWorkflow.xml Tue Aug 08 13:24:14 2017 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Utilities]--> -<tool id="OpenSwathWorkflow" name="OpenSwathWorkflow" version="2.2.0"> +<tool id="OpenSwathWorkflow" name="OpenSwathWorkflow" version="2.2.0.1"> <description>Complete workflow to run OpenSWATH</description> <macros> <token name="@EXECUTABLE@">OpenSwathWorkflow</token> @@ -466,7 +466,7 @@ <param name="param_outlierDetection_MinBinsFilled" type="integer" value="8" label="Minimal number of bins required to be covered" help="(-MinBinsFilled) "/> <expand macro="advanced_options"> <param name="param_rt_norm" type="data" format="trafoxml" optional="True" label="RT normalization file (how to map the RTs of this run to the ones stored in the library)" help="(-rt_norm) If set, tr_irt may be omitted"/> - <param name="param_swath_windows_file" type="data" format="text" label="Optional, tab separated file containing the SWATH windows for extraction: lower_offset upper_offset \newline 400 425 \newline .." help="(-swath_windows_file) Note that the first line is a header and will be skipped"/> + <param name="param_swath_windows_file" type="data" format="txt" label="Optional, tab separated file containing the SWATH windows for extraction: lower_offset upper_offset \newline 400 425 \newline .." help="(-swath_windows_file) Note that the first line is a header and will be skipped"/> <param name="param_sort_swath_maps" display="radio" type="boolean" truevalue="-sort_swath_maps" falsevalue="" checked="false" optional="True" label="Sort of input SWATH files when matching to SWATH windows from swath_windows_file" help="(-sort_swath_maps) "/> <param name="param_use_ms1_traces" display="radio" type="boolean" truevalue="-use_ms1_traces" falsevalue="" checked="false" optional="True" label="Extract the precursor ion trace(s) and use for scoring" help="(-use_ms1_traces) "/> <param name="param_enable_uis_scoring" display="radio" type="boolean" truevalue="-enable_uis_scoring" falsevalue="" checked="false" optional="True" label="Enable additional scoring of identification assays" help="(-enable_uis_scoring) "/>