Mercurial > repos > galaxyp > openms_noisefiltersgolay
changeset 1:ac955430f7c1 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
| author | galaxyp |
|---|---|
| date | Tue, 18 Apr 2017 15:44:21 -0400 (2017-04-18) |
| parents | ae2d145ecafc |
| children | 3d67e04043f0 |
| files | NoiseFilterSGolay.xml readme.md |
| diffstat | 2 files changed, 8 insertions(+), 10 deletions(-) [+] |
line wrap: on
line diff
--- a/NoiseFilterSGolay.xml Wed Mar 01 09:58:49 2017 -0500 +++ b/NoiseFilterSGolay.xml Tue Apr 18 15:44:21 2017 -0400 @@ -26,7 +26,12 @@ #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_processOption: - -processOption $adv_opts.param_processOption + -processOption + #if " " in str($adv_opts.param_processOption): + "$adv_opts.param_processOption" + #else + $adv_opts.param_processOption + #end if #end if #if $adv_opts.param_force: -force
--- a/readme.md Wed Mar 01 09:58:49 2017 -0500 +++ b/readme.md Tue Apr 18 15:44:21 2017 -0400 @@ -39,10 +39,10 @@ * clone or install CTD2Galaxy ```bash - git clone https://github.com/blankclemens/CTD2Galaxy.git + git clone https://github.com/WorkflowConversion/CTD2Galaxy.git ``` - * If you have CTDopts and CTD2Galaxy installed you are ready to generate Galaxy Tools from CTD definitions. Change the following command according to your needs, especially the `/PATH/TO` parts. + * If you have CTDopts and CTD2Galaxy installed you are ready to generate Galaxy Tools from CTD definitions. Change the following command according to your needs, especially the `/PATH/TO` parts. The default files are provided in this repository. ```bash python generator.py \ @@ -102,13 +102,6 @@ [...] ]]> ``` - * In `PeakPickerHiRes.xml`, the parameter `report_FWHM_unit` has to be put in quotation marks. Look for the following line - - -algorithm:report_FWHM_unit $param_algorithm_report_FWHM_unit - - and change it to - - -algorithm:report_FWHM_unit "$param_algorithm_report_FWHM_unit" * In `FileConverter.xml` add `auto_format="true"` to the output, e.g.: