Mercurial > repos > galaxyp > openms_metaprosip
changeset 6:e6fb7acc98cc draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 8fcd33df23901e111d6c18f450bd09cd8cb3819e
author | galaxyp |
---|---|
date | Tue, 08 Aug 2017 13:19:13 -0400 |
parents | cdf2f41e9d31 |
children | d06e5c4396d7 |
files | MetaProSIP.xml |
diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/MetaProSIP.xml Mon Aug 07 14:42:36 2017 -0400 +++ b/MetaProSIP.xml Tue Aug 08 13:19:13 2017 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Utilities]--> -<tool id="MetaProSIP" name="MetaProSIP" version="2.2.0"> +<tool id="MetaProSIP" name="MetaProSIP" version="2.2.0.1"> <description>Performs proteinSIP on peptide features for elemental flux analysis.</description> <macros> <token name="@EXECUTABLE@">MetaProSIP</token> @@ -133,7 +133,7 @@ <param name="param_in_mzML" type="data" format="mzml" optional="False" label="Centroided MS1 data" help="(-in_mzML) "/> <param name="param_in_fasta" type="data" format="fasta" optional="False" label="Protein sequence database" help="(-in_fasta) "/> <param name="param_in_featureXML" type="data" format="featurexml" optional="False" label="Feature data annotated with identifications (IDMapper)" help="(-in_featureXML) "/> - <param name="param_r_executable" type="data" format="text" value="R" label="Path to the R executable (default: 'R')" help="(-r_executable) "/> + <param name="param_r_executable" type="data" format="txt" value="R" label="Path to the R executable (default: 'R')" help="(-r_executable) "/> <param name="param_mz_tolerance_ppm" type="float" value="10.0" label="Tolerance in ppm" help="(-mz_tolerance_ppm) "/> <param name="param_rt_tolerance_s" type="float" value="30.0" label="Rolerance window around feature rt for XIC extraction" help="(-rt_tolerance_s) "/> <param name="param_intensity_threshold" type="float" value="10.0" label="Intensity threshold to collect peaks in the MS1 spectrum" help="(-intensity_threshold) "/>