Mercurial > repos > galaxyp > openms_idripper

annotate IDRipper.xml @ 3:de57be37d40b draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
author galaxyp
date Fri, 14 Jul 2017 18:51:48 -0400
parents 51dbe5760168
children 6833fa454e8d
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51dbe5760168 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
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3 <!--Proposed Tool Section: [File Handling]-->
3
de57be37d40b planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
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4 <tool id="IDRipper" name="IDRipper" version="2.2.0">
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5 <description>Split protein/peptide identification file into several files according to annotated file origin.</description>
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6 <macros>
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7 <token name="@EXECUTABLE@">IDRipper</token>
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8 <import>macros.xml</import>
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9 </macros>
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10 <expand macro="references"/>
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11 <expand macro="stdio"/>
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12 <expand macro="requirements"/>
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13 <command>IDRipper
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14
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15 #if $param_in:
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16 -in $param_in
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17 #end if
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18 #if $param_out:
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19 -out $param_out
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20 #end if
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21 #if $param_out_path:
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22 -out_path "$param_out_path"
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23 #end if
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24 #if $adv_opts.adv_opts_selector=='advanced':
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25 #if $adv_opts.param_force:
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26 -force
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27 #end if
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28 #end if
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29 </command>
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30 <inputs>
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31 <param name="param_in" type="data" format="idxml" optional="False" label="Input file, in which the protein/peptide identifications must be tagged with 'file_origin'" help="(-in) "/>
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32 <param name="param_out_path" type="text" size="30" label="Directory for the output files after ripping according to 'file_origin'" help="(-out_path) If 'out_path' is set, 'out' is ignored">
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33 <sanitizer>
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34 <valid initial="string.printable">
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35 <remove value="'"/>
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36 <remove value="&quot;"/>
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37 </valid>
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38 </sanitizer>
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39 </param>
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40 <expand macro="advanced_options">
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41 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
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42 </expand>
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43 </inputs>
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44 <outputs>
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45 <data name="param_out" format="idxml"/>
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46 </outputs>
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47 <help>Split protein/peptide identification file into several files according to annotated file origin.
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48
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49
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50 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDRipper.html</help>
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51 </tool>