changeset 11:fc1196abd955 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 42171f39c42277bcfb50271180dcc9c82d3e8e74
author galaxyp
date Mon, 12 Feb 2018 08:43:40 -0500
parents ec53cf79b094
children 29d6b012e395
files IDMapper.xml readme.md
diffstat 2 files changed, 11 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/IDMapper.xml	Sat Oct 28 04:23:55 2017 -0400
+++ b/IDMapper.xml	Mon Feb 12 08:43:40 2018 -0500
@@ -91,7 +91,7 @@
     </expand>
   </inputs>
   <outputs>
-    <data name="param_out" metadata_source="param_in" format="input"/>
+    <data name="param_out" metadata_source="param_in" format_source="param_in"/>
   </outputs>
   <help>Assigns protein/peptide identifications to features or consensus features.
 
--- a/readme.md	Sat Oct 28 04:23:55 2017 -0400
+++ b/readme.md	Mon Feb 12 08:43:40 2018 -0500
@@ -117,7 +117,14 @@
     [...]
     ]]>
     ```
-    
+ 
+ * In Xtandem Converter and probably in others:
+ 
+    ```
+    #if str($param_missed_cleavages) != '':
+    ```
+    This is because integers needs to be compared as string otherwise `0` becomes `false`.
+ 
  * In `MetaProSIP.xml` add `R` as a requirement:
  
    ```
@@ -164,7 +171,8 @@
     ```
     
 
- * These tools have multiple outputs (number of inputs = number of outputs) which is not yet supported in Galaxy-stable and are therefore in `SKIP_TOOLS_FILES.txt`:
+ * These tools have multiple outputs (number of inputs = number of outputs) which is not yet supported in
+   by the automatic conversion step and are therefore in `SKIP_TOOLS_FILES.txt`:
     * SeedListGenerator
     * SpecLibSearcher
     * MapAlignerIdentification