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annotate FileInfo.xml @ 3:36f9e8188a1e draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
author galaxyp
date Fri, 14 Jul 2017 18:47:53 -0400
parents 78cb3ff753bc
children 56c289a8baa2
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78cb3ff753bc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
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3 <!--Proposed Tool Section: [File Handling]-->
3
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4 <tool id="FileInfo" name="FileInfo" version="2.2.0">
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5 <description>Shows basic information about the file, such as data ranges and file type.</description>
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6 <macros>
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7 <token name="@EXECUTABLE@">FileInfo</token>
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8 <import>macros.xml</import>
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9 </macros>
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10 <expand macro="references"/>
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11 <expand macro="stdio"/>
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12 <expand macro="requirements"/>
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13 <command>FileInfo
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14
78cb3ff753bc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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15 #if $param_in:
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16 -in $param_in
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17 #end if
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18 #if $param_out:
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19 -out $param_out
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20 #end if
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21 #if $param_out_tsv:
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22 -out_tsv $param_out_tsv
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23 #end if
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24 #if $param_m:
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25 -m
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26 #end if
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27 #if $param_p:
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28 -p
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29 #end if
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30 #if $param_s:
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31 -s
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32 #end if
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33 #if $param_d:
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34 -d
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35 #end if
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36 #if $param_c:
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37 -c
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38 #end if
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39 #if $param_v:
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40 -v
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41 #end if
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42 #if $param_i:
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43 -i
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44 #end if
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45 #if $adv_opts.adv_opts_selector=='advanced':
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46 #if $adv_opts.param_force:
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47 -force
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48 #end if
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49 #end if
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50 </command>
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51 <inputs>
3
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52 <param name="param_in" type="data" format="mzData,mzxml,mzml,dta,dta2d,mgf,featurexml,consensusxml,idxml,pepxml,fid,mzid,trafoxml" optional="False" label="input file" help="(-in) "/>
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53 <param name="param_m" display="radio" type="boolean" truevalue="-m" falsevalue="" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m) "/>
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54 <param name="param_p" display="radio" type="boolean" truevalue="-p" falsevalue="" checked="false" optional="True" label="Shows data processing information" help="(-p) "/>
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55 <param name="param_s" display="radio" type="boolean" truevalue="-s" falsevalue="" checked="false" optional="True" label="Computes a five-number statistics of intensities, qualities, and widths" help="(-s) "/>
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56 <param name="param_d" display="radio" type="boolean" truevalue="-d" falsevalue="" checked="false" optional="True" label="Show detailed listing of all spectra and chromatograms (peak files only)" help="(-d) "/>
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57 <param name="param_c" display="radio" type="boolean" truevalue="-c" falsevalue="" checked="false" optional="True" label="Check for corrupt data in the file (peak files only)" help="(-c) "/>
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58 <param name="param_v" display="radio" type="boolean" truevalue="-v" falsevalue="" checked="false" optional="True" label="Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML)" help="(-v) "/>
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59 <param name="param_i" display="radio" type="boolean" truevalue="-i" falsevalue="" checked="false" optional="True" label="Check whether a given mzML file contains valid indices (conforming to the indexedmzML standard)" help="(-i) "/>
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60 <expand macro="advanced_options">
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61 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
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62 </expand>
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63 </inputs>
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64 <outputs>
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65 <data name="param_out" format="txt"/>
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66 <data name="param_out_tsv" format="tabular"/>
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67 </outputs>
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68 <help>Shows basic information about the file, such as data ranges and file type.
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69
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70
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71 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileInfo.html</help>
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72 </tool>