Mercurial > repos > galaxyp > openms_featurefindermultiplex
changeset 11:10cf202b7035 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 42171f39c42277bcfb50271180dcc9c82d3e8e74
author | galaxyp |
---|---|
date | Mon, 12 Feb 2018 08:42:39 -0500 |
parents | 7d0623030f44 |
children | 9e6747a47a04 |
files | FeatureFinderMultiplex.xml readme.md |
diffstat | 2 files changed, 14 insertions(+), 6 deletions(-) [+] |
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--- a/FeatureFinderMultiplex.xml Sat Oct 28 04:18:28 2017 -0400 +++ b/FeatureFinderMultiplex.xml Mon Feb 12 08:42:39 2018 -0500 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Quantitation]--> -<tool id="FeatureFinderMultiplex" name="FeatureFinderMultiplex" version="2.2.0"> +<tool id="FeatureFinderMultiplex" name="FeatureFinderMultiplex" version="2.2.0.1"> <description>Determination of peak ratios in LC-MS data</description> <macros> <token name="@EXECUTABLE@">FeatureFinderMultiplex</token> @@ -24,9 +24,9 @@ #if $param_out_mzq: -out_mzq $param_out_mzq #end if -#if $param_algorithm_labels: - -algorithm:labels "$param_algorithm_labels" -#end if + +-algorithm:labels '$param_algorithm_labels' + #if $param_algorithm_charge: -algorithm:charge "$param_algorithm_charge" #end if
--- a/readme.md Sat Oct 28 04:18:28 2017 -0400 +++ b/readme.md Mon Feb 12 08:42:39 2018 -0500 @@ -117,7 +117,14 @@ [...] ]]> ``` - + + * In Xtandem Converter and probably in others: + + ``` + #if str($param_missed_cleavages) != '': + ``` + This is because integers needs to be compared as string otherwise `0` becomes `false`. + * In `MetaProSIP.xml` add `R` as a requirement: ``` @@ -164,7 +171,8 @@ ``` - * These tools have multiple outputs (number of inputs = number of outputs) which is not yet supported in Galaxy-stable and are therefore in `SKIP_TOOLS_FILES.txt`: + * These tools have multiple outputs (number of inputs = number of outputs) which is not yet supported in + by the automatic conversion step and are therefore in `SKIP_TOOLS_FILES.txt`: * SeedListGenerator * SpecLibSearcher * MapAlignerIdentification