Mercurial > repos > galaxyp > openms_dtaextractor

diff macros.xml @ 13:5f65ab3bcbb9 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 05:52:59 -0400
parents 2b4228be9a43
children 91d3ebe486f9
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line diff
--- a/macros.xml	Mon Feb 12 08:48:46 2018 -0500
+++ b/macros.xml	Wed May 15 05:52:59 2019 -0400
@@ -2,18 +2,18 @@
 <macros>
   <xml name="requirements">
     <requirements>
-      <requirement type="package" version="2.2">openms</requirement>
+      <requirement type="package" version="2.3">openms</requirement>
       <requirement type="package" version="15.12.15.2">xtandem</requirement>
       <requirement type="package" version="1.0">fido</requirement>
-      <requirement type="package" version="2016.10.26">msgf_plus</requirement>
+      <requirement type="package" version="2017.07.21">msgf_plus</requirement>
       <yield/>
     </requirements>
   </xml>
   <xml name="stdio">
     <stdio>
-      <exit_code range="1:"/>
-      <exit_code range=":-1"/>
-      <regex match="Exception:"/>
+      <regex match="Could not allocate metaspace" level="fatal_oom" description="Java memory Exception"/>
+      <regex match="Cannot create VM thread" level="fatal_oom" description="Java memory Exception"/>
+      <regex match="qUncompress: could not allocate enough memory to uncompress data" level="fatal_oom" description="Java memory Exception"/>
     </stdio>
   </xml>
   <xml name="references">