comparison macros.xml @ 13:5f65ab3bcbb9 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

12:c82d62d9e38a

<?xml version='1.0' encoding='UTF-8'?>
<macros>
  <xml name="requirements">
    <requirements>
      <requirement type="package" version="2.2">openms</requirement>
      <requirement type="package" version="15.12.15.2">xtandem</requirement>
      <requirement type="package" version="1.0">fido</requirement>
      <requirement type="package" version="2016.10.26">msgf_plus</requirement>
      <yield/>
    </requirements>
  </xml>
  <xml name="stdio">
    <stdio>
      <exit_code range="1:"/>
      <exit_code range=":-1"/>
      <regex match="Exception:"/>
    </stdio>
  </xml>
  <xml name="references">
    <citations>
      <citation type="doi">doi:10.1186/1471-2105-9-163</citation>

13:5f65ab3bcbb9

<?xml version='1.0' encoding='UTF-8'?>
<macros>
  <xml name="requirements">
    <requirements>
      <requirement type="package" version="2.3">openms</requirement>
      <requirement type="package" version="15.12.15.2">xtandem</requirement>
      <requirement type="package" version="1.0">fido</requirement>
      <requirement type="package" version="2017.07.21">msgf_plus</requirement>
      <yield/>
    </requirements>
  </xml>
  <xml name="stdio">
    <stdio>
      <regex match="Could not allocate metaspace" level="fatal_oom" description="Java memory Exception"/>
      <regex match="Cannot create VM thread" level="fatal_oom" description="Java memory Exception"/>
      <regex match="qUncompress: could not allocate enough memory to uncompress data" level="fatal_oom" description="Java memory Exception"/>
    </stdio>
  </xml>
  <xml name="references">
    <citations>
      <citation type="doi">doi:10.1186/1471-2105-9-163</citation>