Mercurial > repos > galaxyp > openms_digestor

changeset 7:bb6978cf917b draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 8d70dbb6c61659d5ced433b168a2a4e32c9af677
author galaxyp
date Fri, 18 Aug 2017 14:30:27 -0400
parents b9ed71e178e0
children 269e72d22074
files readme.md
diffstat 1 files changed, 9 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/readme.md	Fri Aug 18 13:40:49 2017 -0400
+++ b/readme.md	Fri Aug 18 14:30:27 2017 -0400
@@ -69,6 +69,7 @@
      omssa_executable pepnovo_executable \
      xtandem_executable param_model_directory \
      java_executable java_memory java_permgen \
+     r_executable rt_concat_trafo_out \
     -f /PATH/TO/filetypes.txt -m /PATH/TO/macros.xml \
     -s PATH/TO/SKIP_TOOLS_FILES.txt
     ```
@@ -117,6 +118,14 @@
     ]]>
     ```
     
+ * In `MetaProSIP.xml` add `R` as a requirement:
+ 
+   ```
+   <expand macro="requirements">
+       <requirement type="package" version="3.3.1">r-base</requirement>
+   </expand>
+   ```
+   
  * In `IDFileConverter.xml` the following is needed in the command section at the beginning (check your file to know what to copy where):
  
    ```