Mercurial > repos > galaxyp > msconvert

comparison test-data/small-mzWindow.mzML @ 6:6b6bba73eadb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit d56659dd48f8c554a832787e71aca6ae65c90848
author galaxyp
date Tue, 14 Mar 2017 16:52:39 -0400
parents ab59b1826345
children e638f7fad66a
comparison
equal deleted inserted replaced
5:637e309295cf 6:6b6bba73eadb
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd"> 2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd">
3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0"> 3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0">
4 <cvList count="2"> 4 <cvList count="2">
5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="3.79.0" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/> 5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.0.1" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/> 6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/>
7 </cvList> 7 </cvList>
8 <fileDescription> 8 <fileDescription>
9 <fileContent> 9 <fileContent>
10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/> 10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/>
18 </sourceFile> 18 </sourceFile>
19 <sourceFile id="small.mzML" name="small.mzML" location="file:///"> 19 <sourceFile id="small.mzML" name="small.mzML" location="file:///">
20 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="4efa13a2795731b5f2a1ff1c463daf0d24b9a9d9"/> 20 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="4efa13a2795731b5f2a1ff1c463daf0d24b9a9d9"/>
21 </sourceFile> 21 </sourceFile>
22 <sourceFile id="small-peakpicking-cwt-allMS.mzML" name="small-peakpicking-cwt-allMS.mzML" location="file:///"> 22 <sourceFile id="small-peakpicking-cwt-allMS.mzML" name="small-peakpicking-cwt-allMS.mzML" location="file:///">
23 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="8af1e376b6ed33679f7fcf965a5e7fd6b1bf77b7"/> 23 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="2d5cdd239d18de37386cf9409e30693767b16f82"/>
24 </sourceFile> 24 </sourceFile>
25 </sourceFileList> 25 </sourceFileList>
26 </fileDescription> 26 </fileDescription>
27 <referenceableParamGroupList count="1"> 27 <referenceableParamGroupList count="1">
28 <referenceableParamGroup id="CommonInstrumentParams"> 28 <referenceableParamGroup id="CommonInstrumentParams">
35 <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/> 35 <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/>
36 </software> 36 </software>
37 <software id="pwiz" version="3.0.8981"> 37 <software id="pwiz" version="3.0.8981">
38 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/> 38 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
39 </software> 39 </software>
40 <software id="pwiz_3.0.8990" version="3.0.8990"> 40 <software id="pwiz_3.0.9987" version="3.0.9987">
41 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/> 41 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
42 </software> 42 </software>
43 </softwareList> 43 </softwareList>
44 <instrumentConfigurationList count="2"> 44 <instrumentConfigurationList count="2">
45 <instrumentConfiguration id="IC1"> 45 <instrumentConfiguration id="IC1">
80 <processingMethod order="0" softwareRef="pwiz"> 80 <processingMethod order="0" softwareRef="pwiz">
81 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/> 81 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/>
82 </processingMethod> 82 </processingMethod>
83 </dataProcessing> 83 </dataProcessing>
84 <dataProcessing id="pwiz_Reader_conversion"> 84 <dataProcessing id="pwiz_Reader_conversion">
85 <processingMethod order="0" softwareRef="pwiz_3.0.8990"> 85 <processingMethod order="0" softwareRef="pwiz_3.0.9987">
86 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/> 86 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/>
87 </processingMethod> 87 </processingMethod>
88 <processingMethod order="1" softwareRef="pwiz_3.0.8990"> 88 <processingMethod order="1" softwareRef="pwiz_3.0.9987">
89 <cvParam cvRef="MS" accession="MS:1000035" name="peak picking" value=""/> 89 <cvParam cvRef="MS" accession="MS:1000035" name="peak picking" value=""/>
90 </processingMethod> 90 </processingMethod>
91 </dataProcessing> 91 </dataProcessing>
92 </dataProcessingList> 92 </dataProcessingList>
93 <run id="small" defaultInstrumentConfigurationRef="IC1" startTimeStamp="2005-07-20T14:44:22Z" defaultSourceFileRef="RAW1"> 93 <run id="small" defaultInstrumentConfigurationRef="IC1" startTimeStamp="2005-07-20T14:44:22Z" defaultSourceFileRef="RAW1">
2714 </chromatogramList> 2714 </chromatogramList>
2715 </run> 2715 </run>
2716 </mzML> 2716 </mzML>
2717 <indexList count="2"> 2717 <indexList count="2">
2718 <index name="spectrum"> 2718 <index name="spectrum">
2719 <offset idRef="controllerType=0 controllerNumber=1 scan=1">5578</offset> 2719 <offset idRef="controllerType=0 controllerNumber=1 scan=1">5577</offset>
2720 <offset idRef="controllerType=0 controllerNumber=1 scan=2">10683</offset> 2720 <offset idRef="controllerType=0 controllerNumber=1 scan=2">10682</offset>
2721 <offset idRef="controllerType=0 controllerNumber=1 scan=3">15932</offset> 2721 <offset idRef="controllerType=0 controllerNumber=1 scan=3">15931</offset>
2722 <offset idRef="controllerType=0 controllerNumber=1 scan=4">22747</offset> 2722 <offset idRef="controllerType=0 controllerNumber=1 scan=4">22746</offset>
2723 <offset idRef="controllerType=0 controllerNumber=1 scan=5">30436</offset> 2723 <offset idRef="controllerType=0 controllerNumber=1 scan=5">30435</offset>
2724 <offset idRef="controllerType=0 controllerNumber=1 scan=6">37948</offset> 2724 <offset idRef="controllerType=0 controllerNumber=1 scan=6">37947</offset>
2725 <offset idRef="controllerType=0 controllerNumber=1 scan=7">45349</offset> 2725 <offset idRef="controllerType=0 controllerNumber=1 scan=7">45348</offset>
2726 <offset idRef="controllerType=0 controllerNumber=1 scan=8">52665</offset> 2726 <offset idRef="controllerType=0 controllerNumber=1 scan=8">52664</offset>
2727 <offset idRef="controllerType=0 controllerNumber=1 scan=9">57721</offset> 2727 <offset idRef="controllerType=0 controllerNumber=1 scan=9">57720</offset>
2728 <offset idRef="controllerType=0 controllerNumber=1 scan=10">62818</offset> 2728 <offset idRef="controllerType=0 controllerNumber=1 scan=10">62817</offset>
2729 <offset idRef="controllerType=0 controllerNumber=1 scan=11">69858</offset> 2729 <offset idRef="controllerType=0 controllerNumber=1 scan=11">69857</offset>
2730 <offset idRef="controllerType=0 controllerNumber=1 scan=12">77514</offset> 2730 <offset idRef="controllerType=0 controllerNumber=1 scan=12">77513</offset>
2731 <offset idRef="controllerType=0 controllerNumber=1 scan=13">84734</offset> 2731 <offset idRef="controllerType=0 controllerNumber=1 scan=13">84733</offset>
2732 <offset idRef="controllerType=0 controllerNumber=1 scan=14">92162</offset> 2732 <offset idRef="controllerType=0 controllerNumber=1 scan=14">92161</offset>
2733 <offset idRef="controllerType=0 controllerNumber=1 scan=15">99590</offset> 2733 <offset idRef="controllerType=0 controllerNumber=1 scan=15">99589</offset>
2734 <offset idRef="controllerType=0 controllerNumber=1 scan=16">105128</offset> 2734 <offset idRef="controllerType=0 controllerNumber=1 scan=16">105127</offset>
2735 <offset idRef="controllerType=0 controllerNumber=1 scan=17">110415</offset> 2735 <offset idRef="controllerType=0 controllerNumber=1 scan=17">110414</offset>
2736 <offset idRef="controllerType=0 controllerNumber=1 scan=18">117450</offset> 2736 <offset idRef="controllerType=0 controllerNumber=1 scan=18">117449</offset>
2737 <offset idRef="controllerType=0 controllerNumber=1 scan=19">125084</offset> 2737 <offset idRef="controllerType=0 controllerNumber=1 scan=19">125083</offset>
2738 <offset idRef="controllerType=0 controllerNumber=1 scan=20">132294</offset> 2738 <offset idRef="controllerType=0 controllerNumber=1 scan=20">132293</offset>
2739 <offset idRef="controllerType=0 controllerNumber=1 scan=21">139710</offset> 2739 <offset idRef="controllerType=0 controllerNumber=1 scan=21">139709</offset>
2740 <offset idRef="controllerType=0 controllerNumber=1 scan=22">147220</offset> 2740 <offset idRef="controllerType=0 controllerNumber=1 scan=22">147219</offset>
2741 <offset idRef="controllerType=0 controllerNumber=1 scan=23">152895</offset> 2741 <offset idRef="controllerType=0 controllerNumber=1 scan=23">152894</offset>
2742 <offset idRef="controllerType=0 controllerNumber=1 scan=24">157870</offset> 2742 <offset idRef="controllerType=0 controllerNumber=1 scan=24">157869</offset>
2743 <offset idRef="controllerType=0 controllerNumber=1 scan=25">164987</offset> 2743 <offset idRef="controllerType=0 controllerNumber=1 scan=25">164986</offset>
2744 <offset idRef="controllerType=0 controllerNumber=1 scan=26">172691</offset> 2744 <offset idRef="controllerType=0 controllerNumber=1 scan=26">172690</offset>
2745 <offset idRef="controllerType=0 controllerNumber=1 scan=27">180004</offset> 2745 <offset idRef="controllerType=0 controllerNumber=1 scan=27">180003</offset>
2746 <offset idRef="controllerType=0 controllerNumber=1 scan=28">187246</offset> 2746 <offset idRef="controllerType=0 controllerNumber=1 scan=28">187245</offset>
2747 <offset idRef="controllerType=0 controllerNumber=1 scan=29">194792</offset> 2747 <offset idRef="controllerType=0 controllerNumber=1 scan=29">194791</offset>
2748 <offset idRef="controllerType=0 controllerNumber=1 scan=30">200481</offset> 2748 <offset idRef="controllerType=0 controllerNumber=1 scan=30">200480</offset>
2749 <offset idRef="controllerType=0 controllerNumber=1 scan=31">205775</offset> 2749 <offset idRef="controllerType=0 controllerNumber=1 scan=31">205774</offset>
2750 <offset idRef="controllerType=0 controllerNumber=1 scan=32">213371</offset> 2750 <offset idRef="controllerType=0 controllerNumber=1 scan=32">213370</offset>
2751 <offset idRef="controllerType=0 controllerNumber=1 scan=33">220506</offset> 2751 <offset idRef="controllerType=0 controllerNumber=1 scan=33">220505</offset>
2752 <offset idRef="controllerType=0 controllerNumber=1 scan=34">227942</offset> 2752 <offset idRef="controllerType=0 controllerNumber=1 scan=34">227941</offset>
2753 <offset idRef="controllerType=0 controllerNumber=1 scan=35">235063</offset> 2753 <offset idRef="controllerType=0 controllerNumber=1 scan=35">235062</offset>
2754 <offset idRef="controllerType=0 controllerNumber=1 scan=36">240414</offset> 2754 <offset idRef="controllerType=0 controllerNumber=1 scan=36">240413</offset>
2755 <offset idRef="controllerType=0 controllerNumber=1 scan=37">245583</offset> 2755 <offset idRef="controllerType=0 controllerNumber=1 scan=37">245582</offset>
2756 <offset idRef="controllerType=0 controllerNumber=1 scan=38">252620</offset> 2756 <offset idRef="controllerType=0 controllerNumber=1 scan=38">252619</offset>
2757 <offset idRef="controllerType=0 controllerNumber=1 scan=39">260408</offset> 2757 <offset idRef="controllerType=0 controllerNumber=1 scan=39">260407</offset>
2758 <offset idRef="controllerType=0 controllerNumber=1 scan=40">267584</offset> 2758 <offset idRef="controllerType=0 controllerNumber=1 scan=40">267583</offset>
2759 <offset idRef="controllerType=0 controllerNumber=1 scan=41">275118</offset> 2759 <offset idRef="controllerType=0 controllerNumber=1 scan=41">275117</offset>
2760 <offset idRef="controllerType=0 controllerNumber=1 scan=42">282378</offset> 2760 <offset idRef="controllerType=0 controllerNumber=1 scan=42">282377</offset>
2761 <offset idRef="controllerType=0 controllerNumber=1 scan=43">288000</offset> 2761 <offset idRef="controllerType=0 controllerNumber=1 scan=43">287999</offset>
2762 <offset idRef="controllerType=0 controllerNumber=1 scan=44">293258</offset> 2762 <offset idRef="controllerType=0 controllerNumber=1 scan=44">293257</offset>
2763 <offset idRef="controllerType=0 controllerNumber=1 scan=45">300375</offset> 2763 <offset idRef="controllerType=0 controllerNumber=1 scan=45">300374</offset>
2764 <offset idRef="controllerType=0 controllerNumber=1 scan=46">308050</offset> 2764 <offset idRef="controllerType=0 controllerNumber=1 scan=46">308049</offset>
2765 <offset idRef="controllerType=0 controllerNumber=1 scan=47">315301</offset> 2765 <offset idRef="controllerType=0 controllerNumber=1 scan=47">315300</offset>
2766 <offset idRef="controllerType=0 controllerNumber=1 scan=48">322658</offset> 2766 <offset idRef="controllerType=0 controllerNumber=1 scan=48">322657</offset>
2767 </index> 2767 </index>
2768 <index name="chromatogram"> 2768 <index name="chromatogram">
2769 <offset idRef="TIC">330016</offset> 2769 <offset idRef="TIC">330015</offset>
2770 </index> 2770 </index>
2771 </indexList> 2771 </indexList>
2772 <indexListOffset>331966</indexListOffset> 2772 <indexListOffset>331965</indexListOffset>
2773 <fileChecksum>eb547bb98aaca512c02f4ad9f58e484f3f1b96da</fileChecksum> 2773 <fileChecksum>e0bc0b6a6d51fe2763472838f0378aba83a6d6f2</fileChecksum>
2774 </indexedmzML> 2774 </indexedmzML>