comparison msconvert_nix/test-data/Rpal_01.pepXML @ 6:6b6bba73eadb draft

planemo upload commit d56659dd48f8c554a832787e71aca6ae65c90848

6:6b6bba73eadb

<?xml version="1.0" encoding="ISO-8859-1"?>
<msms_pipeline_analysis date="2011-10-31T11:08:11" summary_xml="Rpal_01.pepXML" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/pepXML/pepXML_v117.xsd">
  <analysis_summary analysis="MyriMatch" version="2.1.101" time="2011-10-31T11:08:11"/>
  <msms_run_summary base_name="Rpal_01" raw_data_type="" raw_data="">
    <sample_enzyme name="Trypsin/P" independent="false" fidelity="specific">
      <specificity sense="C" cut="KR" no_cut="" min_spacing="1"/>
    </sample_enzyme>
    <search_summary base_name="Rpal_01" search_engine="MyriMatch" precursor_mass_type="monoisotopic" fragment_mass_type="monoisotopic" out_data_type="" out_data="">
      <search_database local_path="Mark12-Rpal-20050929-reverse.fasta" database_name="SDB" type="AA"/>
      <enzymatic_search_constraint enzyme="Trypsin/P" max_num_internal_cleavages="100000" min_number_termini="2"/>
      <parameter name="Config: AvgPrecursorMzTolerance" value="1.5mz"/>
      <parameter name="Config: ClassSizeMultiplier" value="2"/>
      <parameter name="Config: CleavageRules" value="trypsin/p"/>
      <parameter name="Config: ComputeXCorr" value="1"/>
      <parameter name="Config: DecoyPrefix" value="rev_"/>
      <parameter name="Config: DynamicMods" value=""/>
      <parameter name="Config: EstimateSearchTimeOnly" value="0"/>
      <parameter name="Config: FragmentMzTolerance" value="30ppm"/>
      <parameter name="Config: FragmentationAutoRule" value="1"/>
      <parameter name="Config: FragmentationRule" value="cid"/>
      <parameter name="Config: MaxDynamicMods" value="2"/>
      <parameter name="Config: MaxFragmentChargeState" value="0"/>
      <parameter name="Config: MaxMissedCleavages" value="100000"/>
      <parameter name="Config: MaxPeakCount" value="300"/>
      <parameter name="Config: MaxPeptideLength" value="75"/>
      <parameter name="Config: MaxPeptideMass" value="10000"/>
      <parameter name="Config: MaxPeptideVariants" value="1000000"/>
      <parameter name="Config: MaxResultRank" value="2"/>
      <parameter name="Config: MinPeptideLength" value="5"/>
      <parameter name="Config: MinPeptideMass" value="0"/>
      <parameter name="Config: MinResultScore" value="9.9999999999999995e-008"/>
      <parameter name="Config: MinTerminiCleavages" value="2"/>
      <parameter name="Config: MonoPrecursorMzTolerance" value="10ppm"/>
      <parameter name="Config: MonoisotopeAdjustmentSet" value="[-1,2] "/>
      <parameter name="Config: NumBatches" value="50"/>
      <parameter name="Config: NumChargeStates" value="3"/>
      <parameter name="Config: NumIntensityClasses" value="3"/>
      <parameter name="Config: NumMzFidelityClasses" value="3"/>
      <parameter name="Config: OutputFormat" value="pepXML"/>
      <parameter name="Config: OutputSuffix" value=""/>
      <parameter name="Config: PrecursorMzToleranceRule" value="auto"/>
      <parameter name="Config: PreferIntenseComplements" value="1"/>
      <parameter name="Config: ProteinDatabase" value="Mark12-Rpal-20050929-reverse.fasta"/>
      <parameter name="Config: ProteinListFilters" value=""/>
      <parameter name="Config: ProteinSamplingTime" value="15"/>
      <parameter name="Config: ResultsPerBatch" value="200000"/>
      <parameter name="Config: SpectrumListFilters" value="peakPicking true 2-"/>
      <parameter name="Config: StaticMods" value=""/>
      <parameter name="Config: StatusUpdateFrequency" value="5"/>
      <parameter name="Config: TicCutoffPercentage" value="0.97999999999999998"/>
      <parameter name="Config: UseMultipleProcessors" value="1"/>
      <parameter name="Config: UseSmartPlusThreeModel" value="1"/>
      <parameter name="Config: WorkingDirectory" value="C:\test\rpal-orbi-orbi\raw"/>
      <parameter name="PeakCounts: 1stQuartile: Filtered" value="94"/>
      <parameter name="PeakCounts: 1stQuartile: Original" value="109"/>
      <parameter name="PeakCounts: 2ndQuartile: Filtered" value="130"/>
      <parameter name="PeakCounts: 2ndQuartile: Original" value="148"/>
      <parameter name="PeakCounts: 3rdQuartile: Filtered" value="162"/>
      <parameter name="PeakCounts: 3rdQuartile: Original" value="182"/>
      <parameter name="PeakCounts: Mean: Filtered" value="127"/>
      <parameter name="PeakCounts: Mean: Original" value="143"/>
      <parameter name="PeakCounts: Min/Max: Filtered" value="9 / 299"/>
      <parameter name="PeakCounts: Min/Max: Original" value="9 / 365"/>
      <parameter name="SearchEngine: Name" value="MyriMatch"/>
      <parameter name="SearchEngine: Version" value="2.1.101"/>
      <parameter name="SearchStats: Nodes" value="1"/>
      <parameter name="SearchStats: Overall" value="9696 proteins; 2367559 peptides; 1463799 variants; 1624470 comparisons"/>
      <parameter name="SearchTime: Duration" value="18.9302578 seconds"/>
      <parameter name="SearchTime: Started" value="11:07:52 on 10/31/2011"/>
      <parameter name="SearchTime: Stopped" value="11:08:11 on 10/31/2011"/>
    </search_summary>
    <spectrum_query spectrum="Rpal_01.4.4.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=4" start_scan="4" end_scan="4" precursor_neutral_mass="971.24544706624" assumed_charge="2" index="2">
      <search_result num_target_comparisons="2774" num_decoy_comparisons="2735">
        <search_hit hit_rank="1" peptide="VMKNVIDR" peptide_prev_aa="R" peptide_next_aa="G" protein="rev_RPA0498" num_tot_proteins="1" calc_neutral_pep_mass="974.1791" massdiff="2.93365293376" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="1" tot_num_ions="14">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="13"/>
          <search_score name="mvh" value="5.705950021744"/>
          <search_score name="mzFidelity" value="7.087171850592"/>
          <search_score name="xcorr" value="0.12372587929479778"/>
        </search_hit>
        <search_hit hit_rank="2" peptide="RTTPLDLR" peptide_prev_aa="R" peptide_next_aa="R" protein="RPA1332" num_tot_proteins="1" calc_neutral_pep_mass="971.11226" massdiff="-0.13318706624" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="1" tot_num_ions="15">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="14"/>
          <search_score name="mvh" value="5.637738227844"/>
          <search_score name="mzFidelity" value="6.950056555619"/>
          <search_score name="xcorr" value="0.16826496059233614"/>
        </search_hit>
        <search_hit hit_rank="2" peptide="MYDFGSPR" peptide_prev_aa="K" peptide_next_aa="G" protein="rev_RPA3341" num_tot_proteins="1" calc_neutral_pep_mass="972.07534" massdiff="0.82989293376" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="1" tot_num_ions="15">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="14"/>
          <search_score name="mvh" value="5.637738227844"/>
          <search_score name="mzFidelity" value="6.950056555619"/>
          <search_score name="xcorr" value="0.24158960944600402"/>
        </search_hit>
      </search_result>
    </spectrum_query>
    <spectrum_query spectrum="Rpal_01.4.4.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=4" start_scan="4" end_scan="4" precursor_neutral_mass="1456.86817059936" assumed_charge="3" index="3">
      <search_result num_target_comparisons="2774" num_decoy_comparisons="2735">
        <search_hit hit_rank="1" peptide="AAAEGERVLGFALR" peptide_prev_aa="R" peptide_next_aa="S" protein="RPA1259" num_tot_proteins="1" calc_neutral_pep_mass="1459.64904" massdiff="2.78086940064" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="2" tot_num_ions="27">
          <search_score name="number of matched peaks" value="2"/>
          <search_score name="number of unmatched peaks" value="25"/>
          <search_score name="mvh" value="9.639448642731"/>
          <search_score name="mzFidelity" value="12.288225127384"/>
          <search_score name="xcorr" value="0.24297397212008945"/>
        </search_hit>
        <search_hit hit_rank="1" peptide="ARDSAPSFLYGGGR" peptide_prev_aa="-" peptide_next_aa="I" protein="rev_RPA4791" num_tot_proteins="1" calc_neutral_pep_mass="1453.55834" massdiff="-3.30983059936" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="2" tot_num_ions="27">
          <search_score name="number of matched peaks" value="2"/>
          <search_score name="number of unmatched peaks" value="25"/>
          <search_score name="mvh" value="9.639448642731"/>
          <search_score name="mzFidelity" value="12.288225127384"/>
          <search_score name="xcorr" value="0.29122955967718733"/>
        </search_hit>
        <search_hit hit_rank="2" peptide="YQFGSCGGGEVSIR" peptide_prev_aa="K" peptide_next_aa="L" protein="rev_RPA2856" num_tot_proteins="1" calc_neutral_pep_mass="1459.58276" massdiff="2.71458940064" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="2" tot_num_ions="28">
          <search_score name="number of matched peaks" value="2"/>
          <search_score name="number of unmatched peaks" value="26"/>
          <search_score name="mvh" value="9.566092014313"/>
          <search_score name="mzFidelity" value="12.143032047397"/>
          <search_score name="xcorr" value="0.32399273418844676"/>
        </search_hit>
      </search_result>
    </spectrum_query>
    <spectrum_query spectrum="Rpal_01.6.6.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6" start_scan="6" end_scan="6" precursor_neutral_mass="1435.68817059936" assumed_charge="3" index="5">
      <search_result num_target_comparisons="2664" num_decoy_comparisons="2703">
        <search_hit hit_rank="1" peptide="WTCTHREPDMR" peptide_prev_aa="K" peptide_next_aa="L" protein="rev_RPA0358" num_tot_proteins="1" calc_neutral_pep_mass="1431.5991" massdiff="-4.08907059936" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="1" tot_num_ions="22">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="21"/>
          <search_score name="mvh" value="4.771549940109"/>
          <search_score name="mzFidelity" value="6.19199306784"/>
          <search_score name="xcorr" value="0.33668218702788"/>
        </search_hit>
        <search_hit hit_rank="2" peptide="ALDAPEITEYWK" peptide_prev_aa="R" peptide_next_aa="S" protein="RPA2211" num_tot_proteins="1" calc_neutral_pep_mass="1435.57622" massdiff="-0.11195059936" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="1" tot_num_ions="23">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="22"/>
          <search_score name="mvh" value="4.72772860527"/>
          <search_score name="mzFidelity" value="6.104439812757"/>
          <search_score name="xcorr" value="0.50852873161295431"/>
        </search_hit>
        <search_hit hit_rank="2" peptide="GLTEVFGEFRER" peptide_prev_aa="R" peptide_next_aa="G" protein="rev_RPA2234" num_tot_proteins="1" calc_neutral_pep_mass="1439.57152" massdiff="3.88334940064" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="1" tot_num_ions="23">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="22"/>
          <search_score name="mvh" value="4.72772860527"/>
          <search_score name="mzFidelity" value="6.104439812757"/>
          <search_score name="xcorr" value="0.090642644567764358"/>
        </search_hit>
      </search_result>
    </spectrum_query>
    <spectrum_query spectrum="Rpal_01.18.18.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=18" start_scan="18" end_scan="18" precursor_neutral_mass="2444.86544706624" assumed_charge="2" index="7">
      <search_result num_target_comparisons="2396" num_decoy_comparisons="2378">
        <search_hit hit_rank="1" peptide="EAGVAVTVRLTVRRPRLGQPLR" peptide_prev_aa="K" peptide_next_aa="V" protein="rev_RPA0929" num_tot_proteins="1" calc_neutral_pep_mass="2444.8806" massdiff="0.01515293376" num_tol_term="2" num_missed_cleavages="4" num_matched_ions="1" tot_num_ions="29">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="28"/>
          <search_score name="mvh" value="6.366468429565"/>
          <search_score name="mzFidelity" value="5.650373022565"/>
          <search_score name="xcorr" value="0.19870963499199726"/>
        </search_hit>
        <search_hit hit_rank="2" peptide="PGRVRDEVLVPLPRPRTAEMR" peptide_prev_aa="R" peptide_next_aa="S" protein="RPA4163" num_tot_proteins="1" calc_neutral_pep_mass="2444.85738" massdiff="-0.00806706624" num_tol_term="2" num_missed_cleavages="4" num_matched_ions="1" tot_num_ions="28">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="27"/>
          <search_score name="mvh" value="5.484818696976"/>
          <search_score name="mzFidelity" value="5.718845762685"/>
          <search_score name="xcorr" value="0.21646692322489985"/>
        </search_hit>
      </search_result>
    </spectrum_query>
    <spectrum_query spectrum="Rpal_01.18.18.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=18" start_scan="18" end_scan="18" precursor_neutral_mass="3667.29817059936" assumed_charge="3" index="8">
      <search_result num_target_comparisons="2396" num_decoy_comparisons="2378">
        <search_hit hit_rank="1" peptide="WAEMEEFQGDKLAADLARTAETCDALIALDVDR" peptide_prev_aa="R" peptide_next_aa="I" protein="rev_RPA2760" num_tot_proteins="1" calc_neutral_pep_mass="3668.02742" massdiff="0.72924940064" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="1" tot_num_ions="62">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="61"/>
          <search_score name="mvh" value="5.621503353119"/>
          <search_score name="mzFidelity" value="4.220733811822"/>
          <search_score name="xcorr" value="0.23354606578336706"/>
        </search_hit>
        <search_hit hit_rank="2" peptide="VIKKSTTGRVLSDDILVIRKGEIAARNASHKMR" peptide_prev_aa="K" peptide_next_aa="V" protein="rev_RPA3091" num_tot_proteins="1" calc_neutral_pep_mass="3664.2889" massdiff="-3.009270599361" num_tol_term="2" num_missed_cleavages="7" num_matched_ions="1" tot_num_ions="62">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="61"/>
          <search_score name="mvh" value="4.705212593079"/>
          <search_score name="mzFidelity" value="4.220733811822"/>
          <search_score name="xcorr" value="0.33999514155915078"/>
        </search_hit>
        <search_hit hit_rank="3" peptide="YGRPLRLNAPWWFWNMFGEQGVFLLSRAQK" peptide_prev_aa="R" peptide_next_aa="K" protein="RPA4436" num_tot_proteins="1" calc_neutral_pep_mass="3669.22194" massdiff="1.92376940064" num_tol_term="2" num_missed_cleavages="3" num_matched_ions="1" tot_num_ions="56">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="55"/>
          <search_score name="mvh" value="4.216502189636"/>
          <search_score name="mzFidelity" value="4.403077095805"/>
          <search_score name="xcorr" value="0.31230731711549931"/>
        </search_hit>
      </search_result>
    </spectrum_query>
    <spectrum_query spectrum="Rpal_01.20.20.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=20" start_scan="20" end_scan="20" precursor_neutral_mass="836.62544706624" assumed_charge="2" index="10">
      <search_result num_target_comparisons="2377" num_decoy_comparisons="2359">
        <search_hit hit_rank="1" peptide="PPSHSRR" peptide_prev_aa="R" peptide_next_aa="A" protein="RPA2556" num_tot_proteins="1" calc_neutral_pep_mass="835.91088" massdiff="-0.71456706624" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="1" tot_num_ions="12">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="11"/>
          <search_score name="mvh" value="5.165723323822"/>
          <search_score name="mzFidelity" value="7.39388253707"/>
          <search_score name="xcorr" value="0.15096145810186862"/>
        </search_hit>
      </search_result>
    </spectrum_query>
    <spectrum_query spectrum="Rpal_01.20.20.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=20" start_scan="20" end_scan="20" precursor_neutral_mass="1254.93817059936" assumed_charge="3" index="11">
      <search_result num_target_comparisons="2377" num_decoy_comparisons="2359">
        <search_hit hit_rank="1" peptide="GRKKRRWDR" peptide_prev_aa="-" peptide_next_aa="K" protein="rev_RPA2576" num_tot_proteins="1" calc_neutral_pep_mass="1257.45118" massdiff="2.51300940064" num_tol_term="2" num_missed_cleavages="5" num_matched_ions="1" tot_num_ions="17">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="16"/>
          <search_score name="mvh" value="5.514616966248"/>
          <search_score name="mzFidelity" value="6.701621452441"/>
          <search_score name="xcorr" value="0.11619574564043432"/>
        </search_hit>
        <search_hit hit_rank="2" peptide="KRRDKKRLR" peptide_prev_aa="K" peptide_next_aa="E" protein="RPA3081" num_tot_proteins="1" calc_neutral_pep_mass="1255.51988" massdiff="0.58170940064" num_tol_term="2" num_missed_cleavages="6" num_matched_ions="1" tot_num_ions="18">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="17"/>
          <search_score name="mvh" value="5.458269119263"/>
          <search_score name="mzFidelity" value="6.588355047646"/>
          <search_score name="xcorr" value="0.44604161430476236"/>
        </search_hit>
      </search_result>
    </spectrum_query>
    <spectrum_query spectrum="Rpal_01.21.21.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=21" start_scan="21" end_scan="21" precursor_neutral_mass="1996.44544706624" assumed_charge="2" index="13">
      <search_result num_target_comparisons="2376" num_decoy_comparisons="2457">
        <search_hit hit_rank="1" peptide="VPRKPQPRKAAVRRPSR" peptide_prev_aa="K" peptide_next_aa="A" protein="rev_RPA2589" num_tot_proteins="1" calc_neutral_pep_mass="1999.3734" massdiff="2.92795293376" num_tol_term="2" num_missed_cleavages="6" num_matched_ions="1" tot_num_ions="29">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="28"/>
          <search_score name="mvh" value="5.263653278351"/>
          <search_score name="mzFidelity" value="5.650519300492"/>
          <search_score name="xcorr" value="0.38562970847777772"/>
        </search_hit>
        <search_hit hit_rank="2" peptide="KALEGDEHPDIIVFRKK" peptide_prev_aa="K" peptide_next_aa="D" protein="rev_RPA0865" num_tot_proteins="1" calc_neutral_pep_mass="1995.28208" massdiff="-1.16336706624" num_tol_term="2" num_missed_cleavages="3" num_matched_ions="1" tot_num_ions="30">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="29"/>
          <search_score name="mvh" value="5.230051994324"/>
          <search_score name="mzFidelity" value="5.584485484559"/>
          <search_score name="xcorr" value="0.1350407991673217"/>
        </search_hit>
        <search_hit hit_rank="2" peptide="SVTPEYLICLEDGKRFK" peptide_prev_aa="K" peptide_next_aa="S" protein="RPA1852" num_tot_proteins="1" calc_neutral_pep_mass="1998.30256" massdiff="1.85711293376" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="1" tot_num_ions="30">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="29"/>
          <search_score name="mvh" value="5.230051994324"/>
          <search_score name="mzFidelity" value="5.584485484559"/>
          <search_score name="xcorr" value="0.21671201714405447"/>
        </search_hit>
      </search_result>
    </spectrum_query>
    <spectrum_query spectrum="Rpal_01.21.21.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=21" start_scan="21" end_scan="21" precursor_neutral_mass="2994.66817059936" assumed_charge="3" index="14">
      <search_result num_target_comparisons="2376" num_decoy_comparisons="2457">
        <search_hit hit_rank="1" peptide="FLMERYDRRNTETSEVGIVDFRKK" peptide_prev_aa="R" peptide_next_aa="I" protein="rev_RPA0940" num_tot_proteins="1" calc_neutral_pep_mass="2990.35276" massdiff="-4.31541059936" num_tol_term="2" num_missed_cleavages="5" num_matched_ions="1" tot_num_ions="45">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="44"/>
          <search_score name="mvh" value="4.829092979431"/>
          <search_score name="mzFidelity" value="4.807287883047"/>
          <search_score name="xcorr" value="0.056497040579923996"/>
        </search_hit>
        <search_hit hit_rank="1" peptide="LIVQFQYYHQLRNPNEGYRGDKPR" peptide_prev_aa="K" peptide_next_aa="R" protein="rev_RPA1045" num_tot_proteins="1" calc_neutral_pep_mass="2992.30882" massdiff="-2.35935059936" num_tol_term="2" num_missed_cleavages="3" num_matched_ions="1" tot_num_ions="45">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="44"/>
          <search_score name="mvh" value="4.829092979431"/>
          <search_score name="mzFidelity" value="4.807287883047"/>
          <search_score name="xcorr" value="0.024783885350877083"/>
        </search_hit>
        <search_hit hit_rank="2" peptide="TDLGQINQMCWLLRQELDMVRDADK" peptide_prev_aa="K" peptide_next_aa="F" protein="rev_RPA4468" num_tot_proteins="1" calc_neutral_pep_mass="2992.41008" massdiff="-2.25809059936" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="1" tot_num_ions="46">
          <search_score name="number of matched peaks" value="1"/>
          <search_score name="number of unmatched peaks" value="45"/>
          <search_score name="mvh" value="4.807414531708"/>
          <search_score name="mzFidelity" value="4.76605825625"/>
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        <search_hit hit_rank="3" peptide="SREQPKEAVAKDDSPK" peptide_prev_aa="R" peptide_next_aa="K" protein="rev_RPA2658" num_tot_proteins="1" calc_neutral_pep_mass="1783.9064405509" massdiff="-0.030788741903" num_tol_term="2" num_missed_cleavages="3" num_matched_ions="7" tot_num_ions="29">
          <search_score name="number of matched peaks" value="7"/>
          <search_score name="number of unmatched peaks" value="22"/>
          <search_score name="mvh" value="28.938888072968"/>
          <search_score name="mzFidelity" value="48.686009810194"/>
          <search_score name="xcorr" value="0.80805631181364879"/>
        </search_hit>
      </search_result>
    </spectrum_query>
    <spectrum_query spectrum="Rpal_01.2434.2434.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=2434" start_scan="2434" end_scan="2434" precursor_neutral_mass="1081.63681425374" assumed_charge="2" index="4041">
      <search_result num_target_comparisons="109" num_decoy_comparisons="122">
        <search_hit hit_rank="1" peptide="QLGGPVWVVK" peptide_prev_aa="K" peptide_next_aa="S" protein="RPA0191" num_tot_proteins="1" calc_neutral_pep_mass="1081.6284151971" massdiff="-0.00839905664" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="8" tot_num_ions="18">
          <search_score name="number of matched peaks" value="8"/>
          <search_score name="number of unmatched peaks" value="10"/>
          <search_score name="mvh" value="38.772735834122"/>
          <search_score name="mzFidelity" value="65.054646326801"/>
          <search_score name="xcorr" value="1.6667071547922678"/>
        </search_hit>
        <search_hit hit_rank="2" peptide="NPALRREVK" peptide_prev_aa="K" peptide_next_aa="L" protein="RPA2977" num_tot_proteins="1" calc_neutral_pep_mass="1081.63562584" massdiff="-0.00118841374" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="4" tot_num_ions="16">
          <search_score name="number of matched peaks" value="4"/>
          <search_score name="number of unmatched peaks" value="12"/>
          <search_score name="mvh" value="17.102844238281"/>
          <search_score name="mzFidelity" value="30.837907609603"/>
          <search_score name="xcorr" value="0.44266026132227854"/>
        </search_hit>
        <search_hit hit_rank="3" peptide="AVFVGTLAFR" peptide_prev_aa="K" peptide_next_aa="S" protein="rev_RPA4668" num_tot_proteins="1" calc_neutral_pep_mass="1079.6127651329" massdiff="-0.00671928964" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="4" tot_num_ions="18">
          <search_score name="number of matched peaks" value="4"/>
          <search_score name="number of unmatched peaks" value="14"/>
          <search_score name="mvh" value="16.589879512787"/>
          <search_score name="mzFidelity" value="29.849243245154"/>
          <search_score name="xcorr" value="0.67468716832110653"/>
        </search_hit>
      </search_result>
    </spectrum_query>
    <spectrum_query spectrum="Rpal_01.2436.2436.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=2436" start_scan="2436" end_scan="2436" precursor_neutral_mass="1149.62544706624" assumed_charge="2" index="4043">
      <search_result num_target_comparisons="871" num_decoy_comparisons="890">
        <search_hit hit_rank="1" peptide="NPWEVFVEK" peptide_prev_aa="R" peptide_next_aa="H" protein="RPA0064" num_tot_proteins="1" calc_neutral_pep_mass="1147.27922" massdiff="-2.34622706624" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="10" tot_num_ions="16">
          <search_score name="number of matched peaks" value="10"/>
          <search_score name="number of unmatched peaks" value="6"/>
          <search_score name="mvh" value="50.194524645805"/>
          <search_score name="mzFidelity" value="86.851865019713"/>
          <search_score name="xcorr" value="1.6098698580488562"/>
        </search_hit>
        <search_hit hit_rank="2" peptide="AWLDFVAEKA" peptide_prev_aa="R" peptide_next_aa="-" protein="RPA3576" num_tot_proteins="1" calc_neutral_pep_mass="1149.2951" massdiff="-0.33034706624" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="9" tot_num_ions="17">
          <search_score name="number of matched peaks" value="9"/>
          <search_score name="number of unmatched peaks" value="8"/>
          <search_score name="mvh" value="42.459152936935"/>
          <search_score name="mzFidelity" value="75.613555668398"/>
          <search_score name="xcorr" value="1.9848502265699208"/>
        </search_hit>
        <search_hit hit_rank="3" peptide="DYGLRAGGSTR" peptide_prev_aa="R" peptide_next_aa="V" protein="rev_RPA4459" num_tot_proteins="1" calc_neutral_pep_mass="1152.21798" massdiff="2.59253293376" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="7" tot_num_ions="20">
          <search_score name="number of matched peaks" value="7"/>
          <search_score name="number of unmatched peaks" value="13"/>
          <search_score name="mvh" value="29.204201936722"/>
          <search_score name="mzFidelity" value="54.274397630421"/>
          <search_score name="xcorr" value="1.0154997527897358"/>
        </search_hit>
      </search_result>
    </spectrum_query>
  </msms_run_summary>
</msms_pipeline_analysis>