Mercurial > repos > galaxyp > metaquantome_viz

annotate macros.xml @ 3:5bbedd902998 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit 7b05dd3aa0714e92d56e4d8c82ee3bcafc8854c2"
author galaxyp
date Sat, 30 Jan 2021 17:53:48 +0000
parents 51bc1ccad6aa
children f1f24035f571
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f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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1 <macros>
1
1a402023bdec "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit 74c403057350af3dde81aea154414a0d6a84d2a3"
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2 <token name="@VERSION@">2.0.0</token>
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5bbedd902998 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit 7b05dd3aa0714e92d56e4d8c82ee3bcafc8854c2"
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3 <token name="@GVERSION@">2.0.0-2</token>
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f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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4 <xml name="requirements">
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5 <requirements>
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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6 <requirement type="package" version="@VERSION@">metaquantome</requirement>
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7 <yield/>
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8 </requirements>
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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9 </xml>
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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10 <xml name="db">
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11 <param argument="db_tar" type="data" label="Database Archive File"/>
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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12 </xml>
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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13 <xml name="ONTOLOGY_ARGS">
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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14 <conditional name="ontology_args">
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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15 <param name="ontology" type="select" label="Ontology">
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16 <option value="go">Gene Ontology (GO terms)</option>
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17 <option value="ec">Enzyme Commission (EC) numbers</option>
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18 <option value="cog">Clusters of Orthologous Groups (COG categories)</option>
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19 </param>
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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20 <when value="go">
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21 <param argument="--slim_down" type="boolean" label="Use slim GO"/>
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22 </when>
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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23 <when value="ec">
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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24 <!-- do nothing -->
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25 </when>
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26 <when value="cog">
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27 <!-- do nothing -->
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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28 </when>
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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29 </conditional>
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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30 </xml>
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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31 <token name="@COMMON_PARAMS@"><![CDATA[
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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32 --samps '$samps'
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33 --mode '$mode_args.mode'
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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34 #if $mode_args.mode == 'f'
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35 --ontology='$mode_args.ontology_args.ontology'
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36 #end if
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37 #if $mode_args.mode == 'ft'
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38 --ontology='$mode_args.ontology_args.ontology'
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39 #end if
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40 ]]>
f36abbd809dc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
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41 </token>
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42 <xml name="SAMPS">
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43 <param name="samps" type="data" format="tabular" label="Samples file"
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44 help="must be created by 'metaQuantome: create samples file'"/>
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45 </xml>
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46 <xml name="citations">
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47 <citations>
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48 <yield />
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49 </citations>
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50 </xml>
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51 </macros>