Mercurial > repos > galaxyp > maldi_quant_peak_detection
annotate test-data/outfile2.imzml @ 3:c42549f04fdd draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
| author | galaxyp |
|---|---|
| date | Fri, 15 Feb 2019 10:14:01 -0500 |
| parents | |
| children |
| rev | line source |
|---|---|
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3
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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1 <?xml version="1.0" encoding="utf-8"?> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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2 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="out" version="1.1.0"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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3 <cvList count="2"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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4 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="3.44.0" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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5 <cv id="UO" fullName="Unit Ontology" version="12:10:2012" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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6 <cv id="IMS" fullName="Imaging MS Ontology" version="0.9.1" URI="http://www.maldi-msi.org/download/imzml/imagingMS.obo"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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7 </cvList> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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8 <fileDescription> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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9 <fileContent> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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11 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="{54a5519e-643b-4eb1-b82b-d55aaa5e9015}"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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12 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="12d68eada8b274b1bba9520cef0ff98d6fc95bf4"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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13 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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14 <userParam name="MALDIquantForeign" value="MALDIquant object(s) exported to mzML"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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15 </fileContent> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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16 </fileDescription> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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17 <softwareList count="1"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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18 <software id="MALDIquantForeign" version="0.11.5"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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19 </softwareList> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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20 <referenceableParamGroupList count="2"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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21 <referenceableParamGroup id="mzArray"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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22 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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23 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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24 <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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25 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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26 </referenceableParamGroup> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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27 <referenceableParamGroup id="intensityArray"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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28 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of counts"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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29 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value=""/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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30 <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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31 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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32 </referenceableParamGroup> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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33 </referenceableParamGroupList> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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34 <scanSettingsList count="1"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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35 <scanSettings id="scansetting1"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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36 <cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="1"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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37 <cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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38 <cvParam cvRef="IMS" accession="IMS:1000044" name="max dimension x" value="100" unitCvRef="UO" unitAccession="UO:0000017" unitName="micrometer"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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39 <cvParam cvRef="IMS" accession="IMS:1000045" name="max dimension y" value="300" unitCvRef="UO" unitAccession="UO:0000017" unitName="micrometer"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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40 <cvParam cvRef="IMS" accession="IMS:1000046" name="pixel size x" value="100" unitCvRef="UO" unitAccession="UO:0000017" unitName="micrometer"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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41 <cvParam cvRef="IMS" accession="IMS:1000047" name="pixel size y" value="100" unitCvRef="UO" unitAccession="UO:0000017" unitName="micrometer"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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42 </scanSettings> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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43 </scanSettingsList> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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44 <instrumentConfigurationList count="1"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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45 <instrumentConfiguration id="IC0"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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46 </instrumentConfigurationList> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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47 <dataProcessingList count="1"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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48 <dataProcessing id="export"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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49 <processingMethod order="1" softwareRef="MALDIquantForeign"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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50 <userParam name="MALDIquant object(s) exported to mzML" value=""/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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51 </processingMethod> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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52 </dataProcessing> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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53 </dataProcessingList> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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54 <run id="run0" defaultInstrumentConfigurationRef="IC0"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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55 <spectrumList count="2" defaultDataProcessingRef="export"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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56 <spectrum index="0" id="scan=0" defaultArrayLength="8399"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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57 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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58 <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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59 <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="100.000007629395" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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60 <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="799.816687011719" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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61 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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62 <cvParam cvRef="MS" accession="MS:1000285" name="total ion current" value="16.7431673605698"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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63 <scanList count="1"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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64 <scan> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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65 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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66 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
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67 </scan> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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68 </scanList> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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69 <binaryDataArrayList count="2"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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70 <binaryDataArray encodedLength="0"> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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71 <referenceableParamGroupRef ref="mzArray"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
72 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
73 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
74 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="67192"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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75 <binary/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
76 </binaryDataArray> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
77 <binaryDataArray encodedLength="0"> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
78 <referenceableParamGroupRef ref="intensityArray"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
79 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="67208"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
80 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
81 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="67192"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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82 <binary/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
83 </binaryDataArray> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
84 </binaryDataArrayList> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
85 </spectrum> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
86 <spectrum index="1" id="scan=1" defaultArrayLength="8399"> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
87 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
88 <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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89 <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="100.083335876465" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
90 <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="799.9" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
91 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
92 <cvParam cvRef="MS" accession="MS:1000285" name="total ion current" value="10.6534160746182"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
93 <scanList count="1"> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
94 <scan> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
95 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
96 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
97 </scan> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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98 </scanList> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
99 <binaryDataArrayList count="2"> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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100 <binaryDataArray encodedLength="0"> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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changeset
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101 <referenceableParamGroupRef ref="mzArray"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
102 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
103 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
104 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="67192"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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105 <binary/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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106 </binaryDataArray> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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107 <binaryDataArray encodedLength="0"> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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108 <referenceableParamGroupRef ref="intensityArray"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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109 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="134400"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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110 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8399"/> |
|
c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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111 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="67192"/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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112 <binary/> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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113 </binaryDataArray> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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114 </binaryDataArrayList> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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115 </spectrum> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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116 </spectrumList> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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117 </run> |
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c42549f04fdd
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
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118 </mzML> |