Mercurial > repos > galaxyp > idpquery

changeset 2:9682d5d021ab draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/idpquery commit d571b106668cb1e749d6235abf5d2b6224c47d74
author galaxyp
date Mon, 12 Dec 2016 16:57:06 -0500
parents 8d76ac6daa31
children 267570ce819a
files COPYING README.md idpquery.xml test-data/201203-624176-12-mm-gui-test-Gene-GeneId,Accession,DistinctPeptides.tsv test-data/201203-624176-12-mm-gui-test-GeneGroup-GeneGroup,GeneId,DistinctMatches.tsv test-data/201203-624176-12-mm-gui-test-Protein-Accession,FilteredSpectra,Description.tsv test-data/201203-624176-12-mm-gui-test-ProteinGroup-ProteinGroup,Accession,PercentCoverage.tsv test-data/201203-624176-12-mm-gui-test.idpDB tool_dependencies.xml
diffstat 2 files changed, 3 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/idpquery.xml	Tue Sep 15 17:50:19 2015 -0400
+++ b/idpquery.xml	Mon Dec 12 16:57:06 2016 -0500
@@ -55,7 +55,7 @@
         </xml>
     </macros>
     <requirements>
-        <requirement type="package" version="3.0.8789">bumbershoot</requirement>
+        <requirement type="package" version="3.0.10185">bumbershoot</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" level="fatal" description="Job Failed" />
@@ -72,7 +72,7 @@
 ]]>
     </command>
     <inputs>
-        <param name="input" type="data" format="idpdb" label="Input File" multiple="false" />
+        <param name="input" type="data" format="idpdb" label="Input idpDB" multiple="false" />
         <conditional name="group_by">
             <param name="group_by_value" type="select" label="What proteomic entity do you want to group by?" help="Only protein- and gene-centric entities are currently supported.">
                 <option value="Protein" selected="true">Protein</option>
@@ -135,4 +135,4 @@
         <citation type="bibtex">@misc{toolsGalaxyP, author = {Chilton, J, Chambers MC, et al.}, title = {Galaxy Proteomics Tools}, publisher = {GitHub}, journal = {GitHub repository},
                                       year = {2015}, url = {https://github.com/galaxyproteomics/tools-galaxyp}}</citation> <!-- TODO: fix substitution of commit ", commit = {$sha1$}" -->
     </citations>
-</tool>
\ No newline at end of file
+</tool>
--- a/tool_dependencies.xml	Tue Sep 15 17:50:19 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-  <package name="bumbershoot" version="3.0.8789">
-    <repository changeset_revision="d9c7584f69f6" name="package_bumbershoot_3_0_8789" owner="galaxyp" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-  </package>
-</tool_dependency>