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changeset 4:85e3e31ced26 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/hardklor commit 975141c5e10d414c44d5e4172d9cbd5e3e6a1abe
author galaxyp
date Sat, 08 Apr 2017 08:17:07 -0400
parents 9ecfd38a87ac
children b236958c496e
files datatypes_conf.xml hardklor.xml kronik.xml
diffstat 3 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/datatypes_conf.xml	Wed Dec 07 16:50:41 2016 -0500
+++ b/datatypes_conf.xml	Sat Apr 08 08:17:07 2017 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <datatypes>
   <registration>
-    <datatype extension="hk" type="galaxy.datatypes.tabular:Tabular" subclass="true" />
-    <datatype extension="kr" type="galaxy.datatypes.tabular:Tabular" subclass="true" />
+    <datatype extension="hardklor" type="galaxy.datatypes.tabular:Tabular" subclass="true" />
+    <datatype extension="kronik" type="galaxy.datatypes.tabular:Tabular" subclass="true" />
   </registration>
 </datatypes>
--- a/hardklor.xml	Wed Dec 07 16:50:41 2016 -0500
+++ b/hardklor.xml	Sat Apr 08 08:17:07 2017 -0400
@@ -57,7 +57,7 @@
     </inputs>
     
     <outputs>
-        <data format="hk" name="output" />
+        <data format="hardklor" name="output" />
     </outputs>
     <tests>
         <test>
--- a/kronik.xml	Wed Dec 07 16:50:41 2016 -0500
+++ b/kronik.xml	Sat Apr 08 08:17:07 2017 -0400
@@ -8,7 +8,7 @@
     </stdio>
     <command>kronik -c $c -d $d -g $g -m $m -n $n -p $p "$inputfile" "$output"</command>
     <inputs>
-        <param name="inputfile" type="data" format="hk" label="Hardklör isotope distributions" />
+        <param name="inputfile" type="data" format="hardklor" label="Hardklör isotope distributions" />
         <param name="c" type="integer" value="5" label="Contaminant threshold in minutes" help="Peptides persisting for longer than this value are excluded" />
         <param name="d" type="integer" value="3" label="Match tolerance" help="Minimum consecutive scans peptide must be found in" />
         <param name="g" type="integer" value="1" label="Gap tolerance" help="Maximum amount of scans a peptide can skip to be considered in results" />
@@ -17,7 +17,7 @@
         <param name="p" type="integer" value="10" label="Mass accuracy (ppm)" help="Peptides in adjacent scans must differ by less than this value to be called the same." />
     </inputs>
     <outputs>
-        <data format="kr" name="output" />
+        <data format="kronik" name="output" />
     </outputs>
     <tests>
         <test>