Mercurial > repos > galaxyp > feature_alignment
changeset 1:25f43048bff3 draft
Uploaded
| author | galaxyp |
|---|---|
| date | Mon, 11 May 2015 14:20:47 -0400 |
| parents | 7b4d70c9a139 |
| children | 8559c361b8a1 |
| files | feature_alignment.xml |
| diffstat | 1 files changed, 1 insertions(+), 2 deletions(-) [+] |
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--- a/feature_alignment.xml Mon May 11 12:20:44 2015 -0400 +++ b/feature_alignment.xml Mon May 11 14:20:47 2015 -0400 @@ -48,10 +48,9 @@ label="Maximal difference in RT for two isotopic channels in the same run" help="(--iso_max_rt_diff)" /> <param name="frac_selected" type="float" value="0.0" min="0" max="1" label="Do not write peakgroup if selected in less than this fraction of runs" help="(--frac_selected)"/> - <param name="method" type="select" label="Which method to use for the clustering" - help="Note that the MST options will perform a local, MST guided alignment while the other options will use a reference-guided alignment. The global option will also move peaks which are below the selected FDR threshold. (--method)" /> + help="Note that the MST options will perform a local, MST guided alignment while the other options will use a reference-guided alignment. The global option will also move peaks which are below the selected FDR threshold. (--method)" > <option value='best_overall' selected="True">best_overall</option> <option value='best_cluster_score'>best_cluster_score</option> <option value='global_best_cluster_score'>global_best_cluster_score</option>