Mercurial > repos > galaxyp > custom_pro_db
changeset 2:e6f488178a45 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/customProDB commit 141369f97aa2804d2bbfd9ed620ea2a5574994c2-dirty
| author | galaxyp |
|---|---|
| date | Thu, 14 Jan 2016 18:12:22 -0500 |
| parents | 0d9ce24ea038 |
| children | 7e078d4e40f8 |
| files | customProDB.xml |
| diffstat | 1 files changed, 10 insertions(+), 6 deletions(-) [+] |
line wrap: on
line diff
--- a/customProDB.xml Thu Jan 14 13:12:20 2016 -0500 +++ b/customProDB.xml Thu Jan 14 18:12:22 2016 -0500 @@ -34,12 +34,16 @@ <param name="vcfInput" type="data" format="vcf" help="A VCF file to create variant proteins based on individual variation." label="Input Variant Calls"> <validator type="empty_field" message="This field is required."/> </param> - <section name="optionalUserInput" label="Override Default Exon Annotation and Coding Sequences"> - <param name="exonAnno" type="data" format="RData" help="A dataframe of exon annotations in an RData file" label="Exon Annotations" optional="true" /> - <param name="proteinSeq" type="data" format="RData" help="A dataframe containing protein ids and protein sequences in an RData file" label="Protein Sequences" optional="true" /> - <param name="proCodingSeq" type="data" format="RData" help="A dataframe cotaining coding sequences for each protein in an RData file" label="Protein Coding Sequences" optional="true" /> - <param name="header" type="data" format="txt" help="A text file of SAM headers to include in the output file, usually corresponding to the exon and coding sequences used." label="SAM Headers" optional="true" /> - </section> + <conditional name="optionalUserInput"> + <param name="optionalUserInputCondition" type="boolean" label="Override Default Exon Annotation and Coding Sequences" /> + <when value="true"> + <param name="exonAnno" type="data" format="RData" help="A dataframe of exon annotations in an RData file" label="Exon Annotations" optional="true" /> + <param name="proteinSeq" type="data" format="RData" help="A dataframe containing protein ids and protein sequences in an RData file" label="Protein Sequences" optional="true" /> + <param name="proCodingSeq" type="data" format="RData" help="A dataframe cotaining coding sequences for each protein in an RData file" label="Protein Coding Sequences" optional="true" /> + </when> + <when value="false"> + </when> + </conditional> </inputs> <outputs> <data format="fasta" name="output" label="${input.name.rsplit('.',1)[0]}.fasta"/>