Mercurial > repos > galaxyp > custom_pro_db
changeset 15:87274e4ef662 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/custom_pro_db commit 9910ed076e4b8a3f083351b89fa861d0a4a93beb
| author | galaxyp |
|---|---|
| date | Wed, 17 May 2017 20:23:20 -0400 |
| parents | bc10f130dbec |
| children | 7ec9a7cc4e64 |
| files | customProDB.R customProDB.xml |
| diffstat | 2 files changed, 2 insertions(+), 7 deletions(-) [+] |
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--- a/customProDB.R Fri May 12 13:17:27 2017 -0400 +++ b/customProDB.R Wed May 17 20:23:20 2017 -0400 @@ -99,11 +99,6 @@ file.symlink(bam_file, bamLink) file.symlink(bai_file, paste(bamLink, ".bai", sep="")) - # load from GitHub until conda package is available - download.file("https://github.com/ggrothendieck/sqldf/archive/master.zip", "sqldf.zip", quiet=TRUE) - unzip("sqldf.zip") - devtools::load_all("sqldf-master") - # load customProDB from GitHub (NOTE: downloading the zip is faster than cloning the repo with git2r or devtools::install_github) download.file("https://github.com/chambm/customProDB/archive/master.zip", "customProDB.zip", quiet=TRUE) unzip("customProDB.zip")
--- a/customProDB.xml Fri May 12 13:17:27 2017 -0400 +++ b/customProDB.xml Wed May 17 20:23:20 2017 -0400 @@ -14,7 +14,7 @@ <requirement type="package" version="1.1.2">r-stringi</requirement> <requirement type="package" version="1.1.0">r-stringr</requirement> <requirement type="package" version="1.10.0">r-data.table</requirement> - <!--<requirement type="package" version="0.4_10">r-sqldf</requirement>--> + <requirement type="package" version="0.4_10">r-sqldf</requirement> <requirement type="package" version="0.6_6">r-gsubfn</requirement> <requirement type="package" version="2.3_47">r-chron</requirement> <requirement type="package" version="0.3.10">r-proto</requirement> @@ -57,7 +57,7 @@ --cosmic='$index_path/cosmic.RData' #end if #end if - 2>1 + 2>&1 ]]> </command> <inputs>