Mercurial > repos > galaxyp > cardinal_preprocessing

annotate test-data/Combat_40pixel.imzML @ 12:274e81434593 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
author galaxyp
date Wed, 19 Apr 2023 22:29:26 +0000
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12
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
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1 <?xml version="1.0"?>
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
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2 <mzML version="1.1" xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0_idx.xsd">
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
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3 <cvList count="3">
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4 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="1.3.1" URI="http://psidev.info/ms/mzML/psi-ms.obo" />
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5 <cv id="UO" fullName="Unit Ontology" version="1.15" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo" />
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6 <cv id="IMS" fullName="Imaging MS Ontology" version="0.9.1" URI="http://www.maldi-msi.org/download/imzml/imagingMS.obo" />
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7 </cvList>
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8 <fileDescription>
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9 <fileContent>
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10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" />
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11 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value="" />
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12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="c0f40c7d-cdd0-4196-ad84-88898d080695" />
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16 </fileContent>
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17 </fileDescription>
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18 <referenceableParamGroupList count="4">
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19 <referenceableParamGroup id="spectrum1">
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22 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value="" />
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23 </referenceableParamGroup>
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24 <referenceableParamGroup id="scan1">
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26 </referenceableParamGroup>
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27 <referenceableParamGroup id="mzArray">
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33 <referenceableParamGroup id="intensityArray">
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37 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="" />
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38 </referenceableParamGroup>
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39 </referenceableParamGroupList>
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40 <sampleList count="1">
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41 <sample id="sample1" name="Sample1">
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43 </sample>
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44 </sampleList>
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48 </software>
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49 </softwareList>
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50 <scanSettingsList count="1">
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51 <scanSettings id="scansettings1">
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62 </scanSettings>
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63 </scanSettingsList>
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69 <dataProcessingList count="1">
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73 </processingMethod>
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74 </dataProcessing>
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75 </dataProcessingList>
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78 <spectrum id="Spectrum=1" defaultArrayLength="0" index="1">
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79 <referenceableParamGroupRef ref="spectrum1" />
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80 <scanList count="1">
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galaxyp
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diff changeset
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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diff changeset
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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diff changeset
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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galaxyp
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galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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galaxyp
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galaxyp
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galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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diff changeset
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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galaxyp
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galaxyp
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diff changeset
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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diff changeset
1208 </spectrum>
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1209 <spectrum id="Spectrum=40" defaultArrayLength="0" index="40">
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1210 <referenceableParamGroupRef ref="spectrum1" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1211 <scanList count="1">
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1212 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1213 <scan instrumentConfigurationRef="IC1">
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1214 <referenceableParamGroupRef ref="scan1" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1215 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="34" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1216 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="43" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1217 <userParam name="3DPositionX" value="34.000000" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1218 <userParam name="3DPositionY" value="43.000000" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1219 </scan>
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1220 </scanList>
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1221 <binaryDataArrayList count="2">
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1222 <binaryDataArray encodedLength="0">
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1223 <referenceableParamGroupRef ref="mzArray" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1224 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1225 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="388" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1226 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="1552" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1227 <binary />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1228 </binaryDataArray>
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1229 <binaryDataArray encodedLength="0">
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1230 <referenceableParamGroupRef ref="intensityArray" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1231 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="62096" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1232 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="388" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1233 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="1552" />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1234 <binary />
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1235 </binaryDataArray>
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1236 </binaryDataArrayList>
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1237 </spectrum>
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1238 </spectrumList>
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1239 </run>
274e81434593 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit eeeb69463a2037a6ee620b9223cb152fcc39f1b0
galaxyp
parents:
diff changeset
1240 </mzML>