Mercurial > repos > galaxy-australia > cactus_cactus
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author | galaxy-australia |
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date | Mon, 04 Apr 2022 06:08:50 +0000 |
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Cactus ====== This suite contains a wrapper for the `Cactus <github.com/comparativeGenomicsToolkit/cactus>`__ whole-genome aligner and another wrapper for exporting the data it generates. Requirements ------------ The developers provide an official Docker container. However, the Docker container won’t run unless ``/etc/passwd`` is mounted (`see this issue <https://github.com/ComparativeGenomicsToolkit/cactus/issues/677>`__). Because of this, it is recommended to run Cactus using Singularity. Cactus uses a lot of RAM. We have tested it on Galaxy using 24 GB of RAM for a progressive alignment of three chromosome-level, 150 megabase genomes.