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changeset 1:25432d42ad5e draft

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Uploaded
author fubar
date Tue, 24 Sep 2013 22:35:25 -0400
parents ea6678917716
children 0dfe1dc2b274
files tool_dependencies.xml
diffstat 1 files changed, 38 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Sep 24 22:35:25 2013 -0400
@@ -0,0 +1,38 @@
+
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="numpy" version="1.7">
+        <repository name="package_numpy_1_7" owner="blankenberg" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="ghostscript" version="9.07">
+        <repository name="package_ghostscript_9_07" owner="fubar" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="package_weblogo" version="3.3">
+        <install version="1.0">
+            <actions>
+                <!-- populate the environment variables from the dependend repos -->
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="10222a7db54c" name="package_ghostscript_9_07" owner="fubar" toolshed="http://testtoolshed.g2.bx.psu.edu/">
+                        <package name="ghostscript" version="9.07" />
+                    </repository>
+                    <repository name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu/">
+                        <package name="numpy" version="1.7" />
+                    </repository>
+                </action>
+                <!-- install weblogo -->
+                <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="download_by_url">http://weblogo.googlecode.com/files/weblogo-3.3.tar.gz</action>
+                <action type="shell_command">export PYTHONPATH=$INSTALL_DIR/lib/python:$PYTHONPATH_NUMPY:$PYTHONPATH &amp;&amp; 
+                    python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
+                <action type="set_environment">
+                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
+                    <environment_variable action="set_to" name="PYTHONPATH_WEBLOGO">$INSTALL_DIR/lib/python</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+     </package>
+</tool_dependency>