annotate tool_dependencies.xml @ 14:a061150f1d94 draft

Uploaded
author fubar
date Tue, 27 Jan 2015 06:16:16 -0500
parents 445cb45d1bc0
children 1948c6a82a9b
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
1 <?xml version="1.0"?>
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
2 <tool_dependency>
14
a061150f1d94 Uploaded
fubar
parents: 13
diff changeset
3 <package name="R" version="3.1.2">
a061150f1d94 Uploaded
fubar
parents: 13
diff changeset
4 <repository changeset_revision="f0626dac6765" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
4
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
5 </package>
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
6 <package name="graphicsmagick" version="1.3.18">
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
7 <repository changeset_revision="bff3f66adff2" name="package_graphicsmagick_1_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
8 </package>
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
9 <package name="ghostscript" version="9.10">
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
10 <repository changeset_revision="9345d2740f0c" name="package_ghostscript_9_10" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
11 </package>
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
12 <package name="glmnet_lars_2_14" version="2.14">
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
13 <install version="1.0">
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
14 <actions>
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
15 <action type="setup_r_environment">
14
a061150f1d94 Uploaded
fubar
parents: 13
diff changeset
16 <repository changeset_revision="f0626dac6765" name="package_r_3_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
a061150f1d94 Uploaded
fubar
parents: 13
diff changeset
17 <package name="R" version="3.1.2" />
8
4e4f094c338c Uploaded
fubar
parents: 4
diff changeset
18 </repository>
12
12c26de8c872 Uploaded
fubar
parents: 11
diff changeset
19 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/RColorBrewer_1.1-2.tar.gz?raw=true</package>
13
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
20 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/MASS_7.3-35.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
21 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/class_7.3-11.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
22 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/e1071_1.6-4.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
23 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/latticeExtra_0.6-26.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
24 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/Rcpp_0.11.3.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
25 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/plyr_1.8.1.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
26 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/digest_0.6.8.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
27 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/gtable_0.1.2.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
28 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/stringr_0.6.2.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
29 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/reshape2_1.4.1.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
30 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/dichromat_2.0-0.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
31 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/colorspace_1.2-4.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
32 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/munsell_0.4.2.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
33 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/labeling_0.3.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
34 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/scales_0.2.4.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
35 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/proto_0.3-10.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
36 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/ggplot2_1.0.0.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
37 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/nnet_7.3-8.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
38 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/caret_6.0-41.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
39 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/codetools_0.2-9.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
40 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/iterators_1.0.7.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
41 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/foreach_1.4.2.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
42 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/nlme_3.1-118.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
43 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/Matrix_1.1-4.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
44 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/minqa_1.2.4.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
45 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/nloptr_1.0.4.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
46 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/lme4_1.1-7.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
47 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/profileModel_0.5-9.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
48 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/brglm_0.5-9.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
49 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/gtools_3.4.1.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
50 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/BradleyTerry2_1.0-5.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
51 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/pROC_1.7.3.tar.gz?raw=true</package>
10
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
52 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/survival_2.37-7.tar.gz?raw=true</package>
13
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
53 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/Formula_1.1-2.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
54 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/cluster_1.15.3.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
55 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/rpart_4.1-8.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
56 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/acepack_1.3-3.3.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
57 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/foreign_0.8-62.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
58 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/Hmisc_3.14-6.tar.gz?raw=true</package>
445cb45d1bc0 Uploaded
fubar
parents: 12
diff changeset
59 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/pracma_1.7.9.tar.gz?raw=true</package>
10
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
60 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/lars_1.2.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
61 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/glmnet_1.9-8.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
62 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/KernSmooth_2.23-13.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
63 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/numDeriv_2012.9-1.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
64 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/lava_1.3.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
65 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/prodlim_1.5.1.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
66 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/SparseM_1.6.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
67 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/quantreg_5.05.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
68 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/polspline_1.1.9.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
69 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/mvtnorm_1.0-2.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
70 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/TH.data_1.0-6.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
71 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/zoo_1.7-11.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
72 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/sandwich_2.3-2.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
73 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/multcomp_1.3-8.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
74 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/rms_4.2-1.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
75 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/rglasso/pec_2.4.4.tar.gz?raw=true</package>
8738aeafbd4e Uploaded
fubar
parents: 9
diff changeset
76
4
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
77 </action>
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
78 </actions>
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
79 </install>
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
80 <readme>
9
4b62ea84c318 Uploaded
fubar
parents: 8
diff changeset
81 Yee-Haw! Lasso for Galaxy!
14
a061150f1d94 Uploaded
fubar
parents: 13
diff changeset
82 Uses glmnet from the R CRAN.
a061150f1d94 Uploaded
fubar
parents: 13
diff changeset
83 See http://web.stanford.edu/~hastie/glmnet/glmnet_alpha.html
4
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
84 </readme>
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
85 </package>
5f2db639f8eb Uploaded
fubar
parents:
diff changeset
86 </tool_dependency>