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changeset 10:31be675baa50 draft

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Fixes to paths in git for deps
author fubar
date Sat, 31 Oct 2015 07:20:03 -0400 (2015-10-31)
parents 05537d488e4f
children d351a1ec1e18
files rg_nri.xml rglasso_cox.xml tool_dependencies.xml
diffstat 3 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/rg_nri.xml	Sat Oct 31 06:57:59 2015 -0400
+++ b/rg_nri.xml	Sat Oct 31 07:20:03 2015 -0400
@@ -1,7 +1,7 @@
 <tool id="rg_nri" name="NRI" version="0.03">
   <description>and other model improvement measures</description>
   <requirements>
-      <requirement type="package" version="3.2.2">R_3_2_2</requirement>
+      <requirement type="package" version="3.2.2">R</requirement>
       <requirement type="package" version="1.3.18">graphicsmagick</requirement>
       <requirement type="package" version="9.10">ghostscript</requirement>
       <requirement type="package" version="3.2">glmnet_lars_3_2</requirement>
--- a/rglasso_cox.xml	Sat Oct 31 06:57:59 2015 -0400
+++ b/rglasso_cox.xml	Sat Oct 31 07:20:03 2015 -0400
@@ -1,7 +1,7 @@
 <tool id="rglasso_cox" name="Lasso" version="0.03">
   <description>and cox regression using elastic net</description>
   <requirements>
-      <requirement type="package" version="3.2.2">R_3_2_2</requirement>
+      <requirement type="package" version="3.2.2">R</requirement>
       <requirement type="package" version="1.3.18">graphicsmagick</requirement>
       <requirement type="package" version="9.10">ghostscript</requirement>
       <requirement type="package" version="3.2">glmnet_lars_3_2</requirement>
--- a/tool_dependencies.xml	Sat Oct 31 06:57:59 2015 -0400
+++ b/tool_dependencies.xml	Sat Oct 31 07:20:03 2015 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="R_3_2_2" version="3.2.2">
+    <package name="R" version="3.2.2">
         <repository changeset_revision="883acf7a3ddb" name="package_r_3_2_2" owner="mvdbeek" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="graphicsmagick" version="1.3.18">
@@ -14,7 +14,7 @@
             <actions>
                 <action type="setup_r_environment">
                     <repository changeset_revision="883acf7a3ddb" name="package_r_3_2_2" owner="mvdbeek" toolshed="https://testtoolshed.g2.bx.psu.edu">
-                        <package name="R_3_2_2" version="3.2.2" />
+                        <package name="R" version="3.2.2" />
                     </repository>
                     <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/iterators_1.0.8.tar.gz?raw=true</package>
                     <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/foreach_1.4.3.tar.gz?raw=true</package>