Mercurial > repos > fubar > package_rnastar_240d

changeset 0:2ab1b6182b63 draft default tip

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Uploaded
author fubar
date Mon, 29 Sep 2014 03:06:38 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 29 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Sep 29 03:06:38 2014 -0400
@@ -0,0 +1,29 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="rnastar" version="2.4.0d">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://github.com/alexdobin/STAR/archive/STAR_2.4.0d.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="make_directory">$INSTALL_DIR</action>
+                <action type="make_directory">$INSTALL_DIR/bin</action>
+                <action type="move_file">
+                    <source>STAR</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="RNA_STAR_PATH">$INSTALL_DIR/bin/STAR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+Installs the STAR binary for rnastar - see https://github.com/alexdobin/STAR/archive/STAR_2.4.0d.tar.gz
+was https://code.google.com/p/rna-star/
+        </readme>
+    </package>
+</tool_dependency>
+