Mercurial > repos > fubar > package_htseq_0_5_4

changeset 6:7574983a942a draft default tip

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Uploaded
author fubar
date Thu, 06 Jun 2013 08:30:15 -0400 (2013-06-06)
parents 48d30d233a8e
children
files package_htseq_0.5.4/tool_dependency.xml package_htseq_0_5_4/tool_dependency.xml
diffstat 2 files changed, 27 insertions(+), 27 deletions(-) [+]
line wrap: on
line diff
--- a/package_htseq_0.5.4/tool_dependency.xml	Thu Jun 06 07:55:20 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,27 +0,0 @@
-<?xml version="1.0"?>
-<!-- borrowed by Ross Lazarus from Lance Parson's htseq code -->
-<tool_dependency>
-    <package name="package_htseq_0.5_4" version="0.5.4p3">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action>
-                <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
-                <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
-                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
-                <action type="set_environment">
-                    <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-            Installation of HTSeq requires Python 2.5+ (does not yet work with Python 3), and the Numpy Python package.
-        </readme>
-    </package>
-    <package name="package_numpy_1_7" version="1.7.1">
-        <repository name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu"/>
-    </package>
-    <package name="package_matplotlib_1_2" version="1.2">
-        <repository name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"/>
-    </package>
-</tool_dependency>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/package_htseq_0_5_4/tool_dependency.xml	Thu Jun 06 08:30:15 2013 -0400
@@ -0,0 +1,27 @@
+<?xml version="1.0"?>
+<!-- borrowed by Ross Lazarus from Lance Parson's htseq code -->
+<tool_dependency>
+    <package name="package_htseq_0_5_4" version="0.5.4p3">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.5.4p3.tar.gz</action>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
+                <action type="make_directory">$INSTALL_DIR/lib64/python</action> <!-- Not sure why these must be made apriori, but install fails otherwise -->
+                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
+                <action type="set_environment">
+                    <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Installation of HTSeq requires Python 2.5+ (does not yet work with Python 3), and the Numpy Python package.
+        </readme>
+    </package>
+    <package name="package_numpy_1_7" version="1.7.1">
+        <repository name="package_numpy_1_7" owner="blankenberg" toolshed="http://testtoolshed.g2.bx.psu.edu"/>
+    </package>
+    <package name="package_matplotlib_1_2" version="1.2">
+        <repository name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"/>
+    </package>
+</tool_dependency>